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Fix PEtab v2 extension config model #3848

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Run time

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Job	Run time
build (windows-latest, 3.14)	57s
build (ubuntu-latest, 3.12)	46s
build (macos-latest, 3.14)	1m 9s
build (ubuntu-latest, 3.14)	38s
build (windows-latest, 3.12)	58s
build (macos-latest, 3.12)	1m 9s
	5m 37s