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Fix PEtab v2 extension config model #3838

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Job	Run time
build (macos-latest, 3.x)	3m 46s
build (ubuntu-latest, 3.x)	4m 27s
build (ubuntu-latest, 3.12)	6m 7s
build (windows-latest, 3.x)	4m 37s
build (windows-latest, 3.12)	6m 39s
build (macos-latest, 3.12)	4m 24s
	30m 0s