Merge branch 'master' of https://github.com/OpenMendel/VarianceComponentModels.jl

Author: kose-y

.github/workflows/CI.yml

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+# source: https://github.com/invenia/PkgTemplates.jl/blob/master/.github/workflows/CI.yml
+name: CI
+# Run on master, tags, or any pull request
+on:
+  schedule:
+    - cron: '0 2 * * *'  # Daily at 2 AM UTC (8 PM CST)
+  push:
+    branches: [master]
+    tags: ["*"]
+  pull_request:
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - "1.6"
+        os:
+          - ubuntu-latest
+          - macOS-latest
+          - windows-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: actions/cache@v2
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-${{ matrix.arch }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-${{ matrix.arch }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-${{ matrix.arch }}-test-
+            ${{ runner.os }}-${{ matrix.arch }}-
+            ${{ runner.os }}-
+      - run: |
+          julia --project=. -e '
+              using Pkg
+              Pkg.update()'
+      - uses: julia-actions/julia-buildpkg@latest
+      - run: |
+          git config --global user.name Tester
+          git config --global user.email te@st.er
+      - uses: julia-actions/julia-runtest@latest
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info
+
+  slack:
+    name: Notify Slack Failure
+    needs: test
+    runs-on: ubuntu-latest
+    if: always() && github.event_name == 'schedule'
+    steps:
+      - uses: technote-space/workflow-conclusion-action@v2
+      - uses: voxmedia/github-action-slack-notify-build@v1
+        if: env.WORKFLOW_CONCLUSION == 'failure'
+        with:
+          channel: nightly-dev
+          status: FAILED
+          color: danger
+        env:
+          SLACK_BOT_TOKEN: ${{ secrets.DEV_SLACK_BOT_TOKEN }}
+
+  docs:
+    name: Documentation
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: '1.6'
+      - run: | # add unregistered packages first
+          julia --project=docs -e '
+            using Pkg
+            pkg"add https://github.com/OpenMendel/SnpArrays.jl"
+            pkg"add https://github.com/OpenMendel/VarianceComponentModels.jl"
+            pkg"add https://github.com/OpenMendel/OrdinalMultinomialModels.jl"'
+      - run: |
+          julia --project=docs -e '
+            using Pkg
+            Pkg.add("Documenter")
+            Pkg.develop(PackageSpec(path=pwd()))
+            Pkg.instantiate()'
+      - run: |
+          julia --project=docs -e '
+            using Documenter: doctest
+            using TraitSimulation
+            doctest(TraitSimulation)'
+      - run: julia --project=docs docs/make.jl
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/CompatHelper.yml

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+name: CompatHelper
+on:
+  schedule:
+    - cron: 0 0 * * *
+  workflow_dispatch:
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: "Install CompatHelper"
+        run: |
+          import Pkg
+          name = "CompatHelper"
+          uuid = "aa819f21-2bde-4658-8897-bab36330d9b7"
+          version = "2"
+          Pkg.add(; name, uuid, version)
+        shell: julia --color=yes {0}
+      - name: "Run CompatHelper"
+        run: |
+          import CompatHelper
+          CompatHelper.main()
+        shell: julia --color=yes {0}
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
+          # COMPATHELPER_PRIV: ${{ secrets.COMPATHELPER_PRIV }}