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update save analysis results chunk
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‎docs/heritability_v0.7.ipynb‎

Lines changed: 119 additions & 8 deletions
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},
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{
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"cell_type": "code",
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"execution_count": 11,
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"metadata": {
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"collapsed": true
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},
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"outputs": [],
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"execution_count": 95,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/latex": [
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"\\begin{tabular}\n",
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"{l | r | l}\n",
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"name & size & summary \\\\\n",
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"\\hline\n",
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"Base & & Module \\\\\n",
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"Core & & Module \\\\\n",
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"Main & & Module \\\\\n",
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"Plots & 22.448 MiB & Module \\\\\n",
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"Y & 677.461 KiB & 6670×13 Array\\{Float64,2\\} \\\\\n",
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"\\_ & 240 bytes & Tuple\\{Array\\{Float64,2\\},Array\\{Float64,2\\}\\} \\\\\n",
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"cg10k & 1022.983 MiB & 6670×630860 SnpArray \\\\\n",
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"cg10k\\_trait & 1.443 MiB & 6670×15 DataFrame \\\\\n",
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"cg10kdata & 679.508 MiB & VarianceComponentVariate\\{Float64,2,Array\\{Float64,2\\},Array\\{Float64,2\\},Array\\{Float64,2\\}\\} \\\\\n",
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"cg10kdata\\_rotated & 340.136 MiB & TwoVarCompVariateRotate\\{Float64,Array\\{Float64,2\\},Array\\{Float64,2\\}\\} \\\\\n",
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"h & 64 bytes & 3-element Array\\{Float64,1\\} \\\\\n",
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"hST & 144 bytes & 13-element Array\\{Float64,1\\} \\\\\n",
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"hST\\_se & 144 bytes & 13-element Array\\{Float64,1\\} \\\\\n",
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"hse & 64 bytes & 3-element Array\\{Float64,1\\} \\\\\n",
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"maf\\_cg10k & 4.813 MiB & 630860-element Array\\{Float64,1\\} \\\\\n",
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"missings\\_by\\_snp & 4.813 MiB & 1×630860 Array\\{Int64,2\\} \\\\\n",
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"mp & 28.748 MiB & 6670×630860 SparseMatrixCSC\\{Bool,Int32\\} \\\\\n",
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"people & 8 bytes & Int64 \\\\\n",
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"snps & 8 bytes & Int64 \\\\\n",
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"startupfile & 57 bytes & String \\\\\n",
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"trait57\\_data & 339.627 MiB & TwoVarCompVariateRotate\\{Float64,Array\\{Float64,2\\},Array\\{Float64,2\\}\\} \\\\\n",
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"trait57\\_model & 472 bytes & VarianceComponentModel\\{Float64,2,Array\\{Float64,2\\},Array\\{Float64,2\\}\\} \\\\\n",
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"traitall\\_model & 2.961 KiB & VarianceComponentModel\\{Float64,2,Array\\{Float64,2\\},Array\\{Float64,2\\}\\} \\\\\n",
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"traitidx & 16 bytes & 3-element UnitRange\\{Int64\\} \\\\\n",
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"Σa & 6.844 KiB & 13×13 Array\\{Array\\{Float64,2\\},2\\} \\\\\n",
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"Σcov & 2.570 KiB & 18×18 Array\\{Float64,2\\} \\\\\n",
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"Σe & 6.844 KiB & 13×13 Array\\{Array\\{Float64,2\\},2\\} \\\\\n",
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"Φgrm & 339.423 MiB & 6670×6670 Array\\{Float64,2\\} \\\\\n",
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"σ2a & 144 bytes & 13-element Array\\{Float64,1\\} \\\\\n",
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"σ2e & 144 bytes & 13-element Array\\{Float64,1\\} \\\\\n",
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"\\end{tabular}\n"
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],
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"text/markdown": [
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"| name | size | summary |\n",
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"|:----------------- | ------------:|:-------------------------------------------------------------------------------------- |\n",
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"| Base | | Module |\n",
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"| Core | | Module |\n",
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"| Main | | Module |\n",
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"| Plots | 22.448 MiB | Module |\n",
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"| Y | 677.461 KiB | 6670×13 Array{Float64,2} |\n",
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"| _ | 240 bytes | Tuple{Array{Float64,2},Array{Float64,2}} |\n",
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"| cg10k | 1022.983 MiB | 6670×630860 SnpArray |\n",
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"| cg10k_trait | 1.443 MiB | 6670×15 DataFrame |\n",
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"| cg10kdata | 679.508 MiB | VarianceComponentVariate{Float64,2,Array{Float64,2},Array{Float64,2},Array{Float64,2}} |\n",
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"| cg10kdata_rotated | 340.136 MiB | TwoVarCompVariateRotate{Float64,Array{Float64,2},Array{Float64,2}} |\n",
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"| h | 64 bytes | 3-element Array{Float64,1} |\n",
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"| hST | 144 bytes | 13-element Array{Float64,1} |\n",
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"| hST_se | 144 bytes | 13-element Array{Float64,1} |\n",
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"| hse | 64 bytes | 3-element Array{Float64,1} |\n",
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"| maf_cg10k | 4.813 MiB | 630860-element Array{Float64,1} |\n",
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"| missings_by_snp | 4.813 MiB | 1×630860 Array{Int64,2} |\n",
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"| mp | 28.748 MiB | 6670×630860 SparseMatrixCSC{Bool,Int32} |\n",
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"| people | 8 bytes | Int64 |\n",
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"| snps | 8 bytes | Int64 |\n",
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"| startupfile | 57 bytes | String |\n",
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"| trait57_data | 339.627 MiB | TwoVarCompVariateRotate{Float64,Array{Float64,2},Array{Float64,2}} |\n",
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"| trait57_model | 472 bytes | VarianceComponentModel{Float64,2,Array{Float64,2},Array{Float64,2}} |\n",
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"| traitall_model | 2.961 KiB | VarianceComponentModel{Float64,2,Array{Float64,2},Array{Float64,2}} |\n",
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"| traitidx | 16 bytes | 3-element UnitRange{Int64} |\n",
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"| Σa | 6.844 KiB | 13×13 Array{Array{Float64,2},2} |\n",
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"| Σcov | 2.570 KiB | 18×18 Array{Float64,2} |\n",
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"| Σe | 6.844 KiB | 13×13 Array{Array{Float64,2},2} |\n",
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"| Φgrm | 339.423 MiB | 6670×6670 Array{Float64,2} |\n",
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"| σ2a | 144 bytes | 13-element Array{Float64,1} |\n",
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"| σ2e | 144 bytes | 13-element Array{Float64,1} |\n"
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],
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"text/plain": [
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"name size summary \n",
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"––––––––––––––––– –––––––––––– ––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––\n",
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"Base Module \n",
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"Core Module \n",
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"Main Module \n",
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"Plots 22.448 MiB Module \n",
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"Y 677.461 KiB 6670×13 Array{Float64,2} \n",
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"_ 240 bytes Tuple{Array{Float64,2},Array{Float64,2}} \n",
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"cg10k 1022.983 MiB 6670×630860 SnpArray \n",
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"cg10k_trait 1.443 MiB 6670×15 DataFrame \n",
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"cg10kdata 679.508 MiB VarianceComponentVariate{Float64,2,Array{Float64,2},Array{Float64,2},Array{Float64,2}}\n",
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"cg10kdata_rotated 340.136 MiB TwoVarCompVariateRotate{Float64,Array{Float64,2},Array{Float64,2}} \n",
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"h 64 bytes 3-element Array{Float64,1} \n",
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"hST 144 bytes 13-element Array{Float64,1} \n",
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"hST_se 144 bytes 13-element Array{Float64,1} \n",
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"hse 64 bytes 3-element Array{Float64,1} \n",
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"maf_cg10k 4.813 MiB 630860-element Array{Float64,1} \n",
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"missings_by_snp 4.813 MiB 1×630860 Array{Int64,2} \n",
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"mp 28.748 MiB 6670×630860 SparseMatrixCSC{Bool,Int32} \n",
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"people 8 bytes Int64 \n",
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"snps 8 bytes Int64 \n",
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"startupfile 57 bytes String \n",
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"trait57_data 339.627 MiB TwoVarCompVariateRotate{Float64,Array{Float64,2},Array{Float64,2}} \n",
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"trait57_model 472 bytes VarianceComponentModel{Float64,2,Array{Float64,2},Array{Float64,2}} \n",
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"traitall_model 2.961 KiB VarianceComponentModel{Float64,2,Array{Float64,2},Array{Float64,2}} \n",
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"traitidx 16 bytes 3-element UnitRange{Int64} \n",
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"Σa 6.844 KiB 13×13 Array{Array{Float64,2},2} \n",
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"Σcov 2.570 KiB 18×18 Array{Float64,2} \n",
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"Σe 6.844 KiB 13×13 Array{Array{Float64,2},2} \n",
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"Φgrm 339.423 MiB 6670×6670 Array{Float64,2} \n",
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"σ2a 144 bytes 13-element Array{Float64,1} \n",
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"σ2e 144 bytes 13-element Array{Float64,1} "
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]
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},
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"execution_count": 95,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"#using JLD\n",
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"#@save \"copd.jld\"\n",
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"#whos()"
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"#using JLD2, FileIO\n",
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"#save(\"copd.jld2\")\n",
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"#varinfo()"
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]
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}
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],

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