soupx-python/pyproject.toml at master · NiRuff/soupx-python · GitHub

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[build-system]
requires = ["setuptools>=45", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "soupx-python"
version = "0.3.0"
description = "Python implementation of SoupX for removing ambient RNA contamination from droplet-based single-cell RNA sequencing data"
readme = {file = "README.md", content-type = "text/markdown"}  # Specify markdown explicitly
requires-python = ">=3.8"
license = {text = "GPL-2.0"}
maintainers = [{name = "Nicolas Ruffini", email = "nicolas.ruffini@posteo.de"}]
authors = [
    {name = "Nicolas Ruffini", email = "nicolas.ruffini@posteo.de"},
]
keywords = ["single-cell", "RNA-seq", "bioinformatics", "decontamination", "ambient-RNA", "soupx"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "License :: OSI Approved :: GNU General Public License v2 (GPLv2)",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
]

# Core dependencies (analyzed from your code)
dependencies = [
    "numpy>=1.20.0",
    "pandas>=1.3.0",
    "scipy>=1.7.0",
    "statsmodels>=0.12.0",
	"scanpy>=1.8.0",
]

[project.optional-dependencies]

[project.urls]
Homepage = "https://github.com/NiRuff/soupx-python"
Repository = "https://github.com/NiRuff/soupx-python"
"Bug Tracker" = "https://github.com/NiRuff/soupx-python/issues"

[tool.setuptools.packages.find]
include = ["soupx*"]

[tool.black]
line-length = 88
target-version = ['py38']