From 736fd3f6f9a37bf5bbeaca5cd38a088bc4696665 Mon Sep 17 00:00:00 2001 From: Andy Taylor Date: Tue, 4 Aug 2026 15:03:44 +0100 Subject: [PATCH 1/2] fix(deps): upgrade dependencies with known vulnerabilities The audit job runs `uv audit`, which failed on 65 advisories across 15 locked packages (urllib3, starlette, pyjwt, python-multipart, authlib, click, cryptography, idna, mcp, pydantic-settings, pymdown-extensions, pytest, setuptools, torch, transformers). 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Add --all-extras to the sync step that precedes pyright. publish.yml and pre-release.yml ran pyright after the same incomplete sync, so they carried the identical latent defect and would have failed on the next release. Also bump actions/checkout v4.2.2 -> v7.0.1 and astral-sh/setup-uv v4 -> v9.0.0 across all workflows. Both targeted Node 20, which is deprecated and currently force-run on Node 24; this removes the warning before it becomes an error. Existing pin style is preserved per file (SHA pins in ci.yml and nightly-uat.yml, floating tags elsewhere). --- .github/workflows/ci.yml | 34 +++++++++++++-------------- .github/workflows/docs.yml | 4 ++-- .github/workflows/nightly-install.yml | 4 ++-- .github/workflows/nightly-uat.yml | 4 ++-- .github/workflows/pre-release.yml | 10 ++++---- .github/workflows/publish.yml | 14 +++++------ 6 files changed, 35 insertions(+), 35 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 8fcc8e15a..7651c9fe6 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -10,8 +10,8 @@ jobs: lint: runs-on: ubuntu-latest steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: "3.12" - run: uv sync --all-packages @@ -21,19 +21,19 @@ jobs: typecheck: runs-on: ubuntu-latest steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: "3.12" - - run: uv sync --all-packages + - run: uv sync --all-packages --all-extras - run: cd packages/agent-session-tools && uv run pyright src/ - run: cd packages/studyctl && uv run pyright src/ sast: runs-on: ubuntu-latest steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: "3.12" - run: uv sync --all-packages @@ -43,8 +43,8 @@ jobs: audit: runs-on: ubuntu-latest steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: "3.12" - run: uv sync --all-packages @@ -54,8 +54,8 @@ jobs: release-consistency: runs-on: ubuntu-latest steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: "3.12" - run: python scripts/check-release-consistency.py @@ -66,8 +66,8 @@ jobs: matrix: python-version: ["3.12", "3.13"] steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: ${{ matrix.python-version }} - run: uv sync --all-packages --group dev @@ -76,8 +76,8 @@ jobs: build: runs-on: ubuntu-latest steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: "3.12" - run: ./scripts/build-release.sh @@ -86,8 +86,8 @@ jobs: runs-on: ubuntu-latest needs: build steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: "3.12" - run: ./scripts/build-release.sh diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 465a48b33..2d2eb06e5 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -17,11 +17,11 @@ jobs: deploy: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 with: fetch-depth: 0 lfs: true - - uses: astral-sh/setup-uv@v4 + - uses: astral-sh/setup-uv@v9 with: python-version: "3.12" - run: uv sync --extra docs diff --git a/.github/workflows/nightly-install.yml b/.github/workflows/nightly-install.yml index c23e2d4d8..ef010c0ec 100644 --- a/.github/workflows/nightly-install.yml +++ b/.github/workflows/nightly-install.yml @@ -14,9 +14,9 @@ jobs: runs-on: ${{ matrix.os }} timeout-minutes: 10 steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 - - uses: astral-sh/setup-uv@v4 + - uses: astral-sh/setup-uv@v9 with: python-version: ${{ matrix.python-version }} diff --git a/.github/workflows/nightly-uat.yml b/.github/workflows/nightly-uat.yml index 68cfcc216..4e2f097fc 100644 --- a/.github/workflows/nightly-uat.yml +++ b/.github/workflows/nightly-uat.yml @@ -10,9 +10,9 @@ jobs: runs-on: macos-latest timeout-minutes: 30 steps: - - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 - - uses: astral-sh/setup-uv@e4db8464a088ece1b920f60402e813ea4de65b8f # v4 + - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: python-version: "3.12" diff --git a/.github/workflows/pre-release.yml b/.github/workflows/pre-release.yml index 307c46f7c..9effc88fd 100644 --- a/.github/workflows/pre-release.yml +++ b/.github/workflows/pre-release.yml @@ -15,14 +15,14 @@ jobs: runs-on: ubuntu-latest timeout-minutes: 20 steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 - - uses: astral-sh/setup-uv@v4 + - uses: astral-sh/setup-uv@v9 with: python-version: "3.12" - name: Install workspace dependencies - run: uv sync --all-packages --group dev + run: uv sync --all-packages --all-extras --group dev - name: Release consistency run: | @@ -63,11 +63,11 @@ jobs: runs-on: ubuntu-latest timeout-minutes: 15 steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 with: fetch-depth: 0 # need tags for version detection - - uses: astral-sh/setup-uv@v4 + - uses: astral-sh/setup-uv@v9 with: python-version: "3.12" diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index da4c69fa1..fd045958d 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -27,15 +27,15 @@ jobs: quality-gate: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 - name: Install uv - uses: astral-sh/setup-uv@v4 + uses: astral-sh/setup-uv@v9 with: python-version: "3.12" - name: Install workspace dependencies - run: uv sync --all-packages --group dev + run: uv sync --all-packages --all-extras --group dev - name: Release consistency run: | @@ -61,10 +61,10 @@ jobs: needs: quality-gate runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 - name: Install uv - uses: astral-sh/setup-uv@v4 + uses: astral-sh/setup-uv@v9 with: python-version: "3.12" @@ -88,7 +88,7 @@ jobs: needs: build runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 with: fetch-depth: 0 @@ -134,7 +134,7 @@ jobs: permissions: contents: write steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v7 with: ref: main