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Building a aroduction pipeline #36

@sibocw

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@sibocw

Prerequisite: data generated by src/spotlight_tools/scripts/postprocess_recording.py, with align-fly set to True.

  • Run keypoints3d inference code (refactor visualization code? Make parallelized Matplotlib animation library?)
  • Run bodyseg inference code
  • Run keypoints3d visualization
  • Run bodyseg visualization
  • Optionally run muscle image mapping and extract DF/F traces
  • Optionally generate overlay video using muscle mapping outcome

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