From 29f8cbd190b33483584496977a2731766c8c606f Mon Sep 17 00:00:00 2001 From: jwilber Date: Mon, 4 May 2026 12:29:31 -0700 Subject: [PATCH 1/2] bump image Signed-off-by: jwilber --- ci/lepton/scdl_performance/configs/scdl.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ci/lepton/scdl_performance/configs/scdl.yaml b/ci/lepton/scdl_performance/configs/scdl.yaml index 16325ab7db..603182faf9 100644 --- a/ci/lepton/scdl_performance/configs/scdl.yaml +++ b/ci/lepton/scdl_performance/configs/scdl.yaml @@ -12,7 +12,7 @@ template_type: scdl_performance # Defines the base Docker image and registry auth needed ############################################################ container: - image: nvcr.io/nvidia/pytorch:26.02-py3 + image: nvcr.io/nvidia/pytorch:26.04-py3 registry_auth: lepton-nvidia-jwilber ############################################################ From 7bf1a1fb82dd328ddde7b67a05f6a8d3092a5800 Mon Sep 17 00:00:00 2001 From: jwilber Date: Mon, 4 May 2026 12:46:21 -0700 Subject: [PATCH 2/2] remove image dependence, update image, and add new bionemo checkout script Signed-off-by: jwilber --- .../configs/recipes/codonfm_ptl_te.yaml | 30 +------------------ 1 file changed, 1 insertion(+), 29 deletions(-) diff --git a/ci/lepton/model_convergence/configs/recipes/codonfm_ptl_te.yaml b/ci/lepton/model_convergence/configs/recipes/codonfm_ptl_te.yaml index 7d75eb9f92..c6b28110eb 100644 --- a/ci/lepton/model_convergence/configs/recipes/codonfm_ptl_te.yaml +++ b/ci/lepton/model_convergence/configs/recipes/codonfm_ptl_te.yaml @@ -15,15 +15,7 @@ gpu_type: h100-sxm resource_shape: "${device_type}.${num_devices}x${gpu_type}" job_name: "${sanitize:codonfm_ptl_test}8gpu" -branch: jwilber/codon-fm-ci - -############################################################ -# Container Runtime -# Defines the base Docker image and registry auth needed -############################################################ -container: - image: nvcr.io/nvidian/cvai_bnmo_trng/codon_fm_te_bnmo_10292025_multinode - registry_auth: lepton-nvidia-nvcrio-jonathan +branch: main ############################################################ # kratos info: where to log data @@ -84,26 +76,6 @@ split_name_prefix: nopathogen attn_input_format: thd collate_fn: thd -############################################################ -# Checkout Script -# Standardized script to clone the BioNeMo repository and install -# dependencies before the training run starts. Child configs can -# inherit and reuse this logic without modification. -############################################################ -checkout_script: | - cd /workspace/codonfm - git clone https://github.com/NVIDIA/bionemo-framework.git - cd bionemo-framework - if [ -n "${commit_sha}" ]; then - echo "Checking out commit: ${commit_sha}" - git checkout "${commit_sha}" - elif [ "${branch}" != "main" ]; then - echo "Checking out branch: ${branch}" - git checkout "${branch}" - fi - cd bionemo-recipes/recipes/${recipe_subdir} - pip install -e . - ############################################################ # run script # This gets called right after `checkout_script` in the base config.