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#### Part 1: Setting up Environment
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To begin work on this module, you will need to set up your Google Cloud Platform (GCP), Vertex AI, and Jupyter notebook instance. Please begin by navigating to the [NIH Cloud Lab README](https://github.com/STRIDES/NIHCloudLabGCP). This will walk you through the basics of cloud platforms and provide links for setting up the environment. Once you have set up your Google Cloud account, please refer to images below to set up a Jupyter notebook instance under Vertex AI. Follow the steps and clone this repository using the Git command `git clone https://github.com/NIGMS/rnaAssemblyMDI` from a terminal window. Please make sure you only enter the link for the repository that you want to clone. There are other bioinformatics related learning modules available in the [NIGMS Repository](https://github.com/NIGMS). Following is an example of this current repository when cloned in Jupyter notebook using Git.
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To begin work on this module, you will need to set up your Google Cloud Platform (GCP), Vertex AI, and Jupyter notebook instance. Please begin by navigating to the [NIH Cloud Lab README](https://github.com/STRIDES/NIHCloudLabGCP). This will walk you through the basics of cloud platforms and provide links for setting up the environment. Once you have set up your Google Cloud account, please refer to images below to set up a Jupyter notebook instance under Vertex AI. Follow the steps and clone this repository using the Git command `git clone https://github.com/NIGMS/Transcriptome-Assembly-Refinement-and-Applications.git` from a terminal window. Please make sure you only enter the link for the repository that you want to clone. There are other bioinformatics related learning modules available in the [NIGMS Repository](https://github.com/NIGMS). Following is an example of this current repository when cloned in Jupyter notebook using Git.
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#### Optional: *Creating a Nextflow Service Account*
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If you are using Nextflow outside of NIH CloudLab you must set up a service account and add your service account to your notebook permissions before creating the notebook. Follow section 2 of the accompanying [How To document](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateNextflowServiceAccount.md) for instructions. If you are executing this tutorial with an NIH CloudLab account your default Compute Engine service account will have all required IAM roles to run the nextflow portion.

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