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Merge pull request #13 from NIGMS/link-repair
Update Submodule_02_basic_assembly.ipynb
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Submodule_02_basic_assembly.ipynb

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">> - The `eviclass=main` means that this sequence is the primary transcript, and there are alternates identified.\n",
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">> - The `aalen=392` is the amino acid length of the sequence.\n",
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">> - The `complete` means that it is a complete reading frame.\n",
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">> - For more information on interpreting the headers from EviGene, reference the following [link](https://blogs.iu.edu/ncgas/2018/12/17/how-evigene-works/) in section 3.\n",
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">> - For more information on interpreting the headers from EviGene, reference the following [link](http://arthropods.eugenes.org/EvidentialGene/evigene/) in section 3.\n",
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"\n",
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"### BUSCO\n",
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"> BUSCO uses a database of known universal single-copy orthologs under a specific lineage (vertebrata in this case) and checks our assembled transcriptome for those sequences which it expects to find. BUSCO was run on both the TransPi assembly along with the assembly just done by Trinity. To visualize BUSCO's results, refer to the `short_summary.specific.vertebrata_odb10.joined.TransPi.bus4.txt` and `short_summary.specific.vertebrata_odb10.joined.Trinity.bus4.txt` files.\n",

reusable-workflow-repo

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