From 9c3e6b5aa3e77196b8897fc649c91eb85047d63c Mon Sep 17 00:00:00 2001 From: erikhuck Date: Tue, 11 Aug 2026 20:43:19 -0400 Subject: [PATCH] Updates kegg URL to reflect changes in the KEGG REST API --- dev/test_data/all-brite-entry-ids.txt | 2 +- dev/test_data/brite-entries/br_br08902.txt | 3 +- dev/test_data/drug-entry-ids.txt | 7 +- dev/test_data/glycan-pubchem-conv.txt | 15 +- .../map/compound-reaction-pathway.json | 44161 ++++++++-------- dev/test_data/map/pathway-gene.json | 141 +- dev/test_kegg_url.py | 10 +- src/kegg_pull/kegg_url.py | 5 +- 8 files changed, 22274 insertions(+), 22070 deletions(-) diff --git a/dev/test_data/all-brite-entry-ids.txt b/dev/test_data/all-brite-entry-ids.txt index 098d9fb..3177e25 100644 --- a/dev/test_data/all-brite-entry-ids.txt +++ b/dev/test_data/all-brite-entry-ids.txt @@ -83,7 +83,6 @@ br:br08312 br:br08304 br:br08305 br:br08330 -br:br08332 br:br08310 br:br08307 br:br08327 @@ -152,5 +151,6 @@ br:br08441 br:br08431 br:br08606 br:br08608 +br:br08609 br:br08622 br:br08623 \ No newline at end of file diff --git a/dev/test_data/brite-entries/br_br08902.txt b/dev/test_data/brite-entries/br_br08902.txt index f1c9edf..8ccc330 100644 --- a/dev/test_data/brite-entries/br_br08902.txt +++ b/dev/test_data/brite-entries/br_br08902.txt @@ -104,7 +104,6 @@ C br08304 Traditional Chinese Medicine in Japan C br08305 Crude drugs B Drug information C br08330 Drug groups -C br08332 Drug classes C br08310 Target-based classification of drugs C br08307 Antimicrobials C br08327 Antimicrobials abbreviations @@ -133,5 +132,5 @@ B Organism and virus information C br08605 Plant pathogens ! # -#Last updated: June 9, 2025 +#Last updated: August 1, 2026 #» Japanese version diff --git a/dev/test_data/drug-entry-ids.txt b/dev/test_data/drug-entry-ids.txt index b8f22ea..8d9931c 100644 --- a/dev/test_data/drug-entry-ids.txt +++ b/dev/test_data/drug-entry-ids.txt @@ -414,4 +414,9 @@ D13123 D13257 D13275 D13278 -D13312 \ No newline at end of file +D13312 +D13324 +D13335 +D13336 +D13365 +D13366 \ No newline at end of file diff --git a/dev/test_data/glycan-pubchem-conv.txt b/dev/test_data/glycan-pubchem-conv.txt index b6d5ee9..fc83625 100644 --- a/dev/test_data/glycan-pubchem-conv.txt +++ b/dev/test_data/glycan-pubchem-conv.txt @@ -10838,7 +10838,6 @@ pubchem:124501508 gl:G12947 pubchem:124501509 gl:G12948 pubchem:124501510 gl:G12949 pubchem:124501511 gl:G12950 -pubchem:124501512 gl:G12951 pubchem:124501513 gl:G12952 pubchem:124501514 gl:G12953 pubchem:124501515 gl:G12954 @@ -11252,3 +11251,17 @@ pubchem:527701198 gl:G13391 pubchem:528318793 gl:G13392 pubchem:528318794 gl:G13393 pubchem:528318795 gl:G13394 +pubchem:528403405 gl:G13395 +pubchem:528403406 gl:G13396 +pubchem:528403407 gl:G13397 +pubchem:528403408 gl:G13398 +pubchem:528403409 gl:G13399 +pubchem:528403410 gl:G13400 +pubchem:528403411 gl:G13401 +pubchem:528403412 gl:G13402 +pubchem:528403413 gl:G13403 +pubchem:528403414 gl:G13404 +pubchem:528403415 gl:G13405 +pubchem:528403416 gl:G13406 +pubchem:528403417 gl:G13407 +pubchem:528403418 gl:G13408 diff --git a/dev/test_data/map/compound-reaction-pathway.json b/dev/test_data/map/compound-reaction-pathway.json index cdb23ba..23fd020 100644 --- a/dev/test_data/map/compound-reaction-pathway.json +++ b/dev/test_data/map/compound-reaction-pathway.json @@ -1,91 +1,168 @@ { - "cpd:C00009": [ + "cpd:C05441": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C00662": [ + "path:map00100", + "path:map00120", + "path:map00140", + "path:map00830", + "path:map00981", + "path:map01100" + ], + "cpd:C22120": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C05107": [ + "path:map00100", + "path:map01100" + ], + "cpd:C01943": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C08830": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C22123": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C00005": [ "path:map00010", "path:map00020", "path:map00030", + "path:map00040", "path:map00051", "path:map00052", "path:map00053", "path:map00061", + "path:map00062", "path:map00071", + "path:map00073", "path:map00074", + "path:map00100", + "path:map00120", + "path:map00130", + "path:map00140", "path:map00220", "path:map00230", + "path:map00232", "path:map00240", "path:map00250", + "path:map00253", "path:map00254", "path:map00260", "path:map00261", "path:map00270", - "path:map00280", + "path:map00290", "path:map00300", "path:map00310", - "path:map00311", "path:map00330", "path:map00331", "path:map00332", "path:map00333", - "path:map00340", + "path:map00350", + "path:map00360", + "path:map00361", "path:map00362", + "path:map00363", + "path:map00364", + "path:map00380", "path:map00400", - "path:map00401", + "path:map00403", + "path:map00404", "path:map00410", "path:map00430", "path:map00440", "path:map00450", + "path:map00460", "path:map00470", "path:map00480", - "path:map00500", "path:map00510", "path:map00520", "path:map00521", + "path:map00522", + "path:map00523", "path:map00524", - "path:map00525", - "path:map00540", "path:map00541", "path:map00550", - "path:map00552", "path:map00561", "path:map00562", "path:map00564", "path:map00565", "path:map00566", + "path:map00590", + "path:map00591", + "path:map00592", "path:map00600", "path:map00620", - "path:map00625", + "path:map00621", + "path:map00622", + "path:map00623", + "path:map00624", + "path:map00626", "path:map00627", "path:map00630", + "path:map00633", "path:map00640", - "path:map00642", + "path:map00643", "path:map00650", - "path:map00660", "path:map00670", "path:map00680", "path:map00710", "path:map00720", - "path:map00730", "path:map00740", "path:map00750", "path:map00760", + "path:map00770", "path:map00780", "path:map00790", - "path:map00791", + "path:map00830", "path:map00860", "path:map00900", + "path:map00901", "path:map00902", "path:map00903", + "path:map00904", + "path:map00905", "path:map00907", "path:map00908", + "path:map00909", "path:map00910", "path:map00920", - "path:map00970", + "path:map00930", + "path:map00940", + "path:map00941", + "path:map00943", + "path:map00946", + "path:map00950", + "path:map00960", + "path:map00965", + "path:map00966", "path:map00975", + "path:map00980", "path:map00981", + "path:map00982", "path:map00983", + "path:map00984", + "path:map00996", "path:map00997", "path:map00998", "path:map00999", - "path:map01051", + "path:map01040", + "path:map01055", + "path:map01056", + "path:map01057", + "path:map01059", "path:map01100", "path:map01110", "path:map01120", @@ -100,60 +177,21 @@ "path:map01310", "path:map01320" ], - "cpd:C01094": [ - "path:map00051", - "path:map00400", - "path:map01100", - "path:map01120" - ], - "cpd:C00197": [ - "path:map00010", - "path:map00030", - "path:map00051", - "path:map00260", - "path:map00270", - "path:map00440", - "path:map00500", - "path:map00561", - "path:map00630", - "path:map00680", - "path:map00710", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01230" - ], - "cpd:C20835": [ - "path:map00051" - ], - "cpd:C01222": [ - "path:map00051", - "path:map00541", + "cpd:C11522": [ + "path:map00100", "path:map01100", - "path:map01250" + "path:map01110" ], - "cpd:C00354": [ - "path:map00010", - "path:map00030", - "path:map00051", - "path:map00400", - "path:map00680", - "path:map00710", + "cpd:C08821": [ + "path:map00100", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01230" + "path:map01110" ], - "cpd:C01487": [ - "path:map00051", - "path:map01100", - "path:map01120" + "cpd:C05109": [ + "path:map00100" ], - "cpd:C00002": [ + "cpd:C00013": [ "path:map00010", - "path:map00020", "path:map00030", "path:map00040", "path:map00051", @@ -162,6 +200,7 @@ "path:map00061", "path:map00071", "path:map00074", + "path:map00100", "path:map00120", "path:map00130", "path:map00220", @@ -169,15 +208,11 @@ "path:map00240", "path:map00250", "path:map00253", - "path:map00254", - "path:map00260", "path:map00261", "path:map00270", "path:map00280", "path:map00300", - "path:map00310", "path:map00311", - "path:map00330", "path:map00331", "path:map00332", "path:map00333", @@ -190,6 +225,7 @@ "path:map00380", "path:map00400", "path:map00401", + "path:map00403", "path:map00404", "path:map00405", "path:map00410", @@ -198,27 +234,23 @@ "path:map00450", "path:map00460", "path:map00470", - "path:map00480", "path:map00500", "path:map00515", "path:map00520", "path:map00521", + "path:map00523", "path:map00524", "path:map00525", - "path:map00540", "path:map00541", "path:map00550", "path:map00552", "path:map00561", "path:map00562", "path:map00564", - "path:map00565", "path:map00566", "path:map00592", - "path:map00600", "path:map00620", "path:map00624", - "path:map00625", "path:map00627", "path:map00630", "path:map00640", @@ -231,182 +263,110 @@ "path:map00720", "path:map00730", "path:map00740", - "path:map00750", "path:map00760", "path:map00770", "path:map00780", "path:map00785", "path:map00790", - "path:map00791", "path:map00860", "path:map00900", "path:map00901", + "path:map00902", "path:map00903", "path:map00904", + "path:map00906", "path:map00907", "path:map00908", - "path:map00910", + "path:map00909", "path:map00920", "path:map00930", "path:map00940", - "path:map00960", + "path:map00941", + "path:map00943", "path:map00970", "path:map00975", - "path:map00981", "path:map00983", "path:map00984", "path:map00996", "path:map00997", "path:map00998", "path:map00999", - "path:map01051", "path:map01053", "path:map01059", "path:map01100", "path:map01110", "path:map01120", "path:map01200", - "path:map01210", "path:map01212", "path:map01220", "path:map01230", "path:map01232", "path:map01240", "path:map01250", - "path:map01310", "path:map01320" ], - "cpd:C00044": [ - "path:map00010", - "path:map00020", - "path:map00051", - "path:map00230", - "path:map00240", - "path:map00250", - "path:map00310", - "path:map00500", - "path:map00520", - "path:map00525", - "path:map00541", - "path:map00620", - "path:map00640", - "path:map00680", - "path:map00740", - "path:map00770", - "path:map00790", - "path:map00860", + "cpd:C15782": [ + "path:map00100", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01232", - "path:map01240", - "path:map01250" + "path:map01110" ], - "cpd:C00007": [ - "path:map00030", - "path:map00040", - "path:map00051", - "path:map00052", - "path:map00053", - "path:map00061", - "path:map00071", - "path:map00073", + "cpd:C15777": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C01789": [ + "path:map00100", + "path:map00905", + "path:map01100", + "path:map01110" + ], + "cpd:C00019": [ "path:map00100", - "path:map00120", "path:map00130", "path:map00140", - "path:map00220", - "path:map00230", "path:map00232", - "path:map00240", - "path:map00250", "path:map00253", "path:map00254", "path:map00260", "path:map00261", "path:map00270", - "path:map00280", "path:map00310", "path:map00311", "path:map00330", - "path:map00331", "path:map00332", + "path:map00333", "path:map00340", "path:map00350", - "path:map00360", - "path:map00361", - "path:map00362", - "path:map00363", - "path:map00364", - "path:map00365", "path:map00380", - "path:map00400", "path:map00401", "path:map00402", - "path:map00403", "path:map00404", "path:map00405", - "path:map00410", - "path:map00430", "path:map00440", - "path:map00460", + "path:map00450", "path:map00470", - "path:map00480", "path:map00522", "path:map00523", "path:map00524", - "path:map00525", - "path:map00540", - "path:map00541", "path:map00562", "path:map00564", - "path:map00565", - "path:map00566", - "path:map00590", - "path:map00591", "path:map00592", - "path:map00600", - "path:map00620", - "path:map00621", - "path:map00622", - "path:map00623", "path:map00624", - "path:map00625", - "path:map00626", - "path:map00627", - "path:map00630", - "path:map00633", - "path:map00640", - "path:map00642", - "path:map00643", - "path:map00650", - "path:map00660", "path:map00670", "path:map00680", "path:map00730", - "path:map00740", - "path:map00750", "path:map00760", - "path:map00770", "path:map00780", + "path:map00785", "path:map00790", - "path:map00791", - "path:map00830", "path:map00860", "path:map00900", "path:map00901", "path:map00902", - "path:map00903", - "path:map00904", - "path:map00905", "path:map00906", - "path:map00907", "path:map00908", - "path:map00909", - "path:map00910", "path:map00920", - "path:map00930", "path:map00940", "path:map00941", "path:map00943", @@ -415,77 +375,33 @@ "path:map00950", "path:map00960", "path:map00965", - "path:map00966", - "path:map00975", - "path:map00980", "path:map00981", - "path:map00982", "path:map00983", - "path:map00984", "path:map00996", "path:map00997", "path:map00998", "path:map00999", - "path:map01040", + "path:map01051", "path:map01055", "path:map01057", "path:map01059", "path:map01100", "path:map01110", "path:map01120", - "path:map01200", - "path:map01210", - "path:map01212", - "path:map01220", "path:map01230", - "path:map01232", - "path:map01240", - "path:map01250", - "path:map01310", - "path:map01320" - ], - "cpd:C00096": [ - "path:map00051", - "path:map00053", - "path:map00510", - "path:map00520", - "path:map00541", - "path:map00571", - "path:map01100", - "path:map01110", - "path:map01240", - "path:map01250" - ], - "cpd:C00275": [ - "path:map00051", - "path:map00520", - "path:map00541", - "path:map01100", - "path:map01110", "path:map01240", "path:map01250" ], - "cpd:C00577": [ - "path:map00030", - "path:map00051", - "path:map00052", - "path:map00400", - "path:map00561", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200" - ], - "cpd:C00392": [ - "path:map00051", + "cpd:C05442": [ + "path:map00100", "path:map01100", - "path:map07054" + "path:map01110" ], - "cpd:C05144": [ - "path:map00051", + "cpd:C18231": [ + "path:map00100", "path:map01100" ], - "cpd:C00080": [ + "cpd:C00003": [ "path:map00010", "path:map00020", "path:map00030", @@ -507,7 +423,6 @@ "path:map00232", "path:map00240", "path:map00250", - "path:map00253", "path:map00254", "path:map00260", "path:map00261", @@ -517,8 +432,6 @@ "path:map00300", "path:map00310", "path:map00330", - "path:map00331", - "path:map00332", "path:map00333", "path:map00340", "path:map00350", @@ -531,20 +444,15 @@ "path:map00380", "path:map00400", "path:map00401", - "path:map00403", "path:map00404", "path:map00405", "path:map00410", "path:map00430", "path:map00440", - "path:map00450", - "path:map00460", "path:map00470", - "path:map00480", "path:map00510", "path:map00520", "path:map00521", - "path:map00522", "path:map00523", "path:map00524", "path:map00525", @@ -553,12 +461,10 @@ "path:map00561", "path:map00562", "path:map00564", - "path:map00565", "path:map00566", "path:map00590", "path:map00591", "path:map00592", - "path:map00600", "path:map00620", "path:map00621", "path:map00622", @@ -583,7 +489,6 @@ "path:map00750", "path:map00760", "path:map00770", - "path:map00780", "path:map00785", "path:map00790", "path:map00830", @@ -596,18 +501,14 @@ "path:map00905", "path:map00906", "path:map00907", - "path:map00908", "path:map00909", "path:map00910", "path:map00920", "path:map00930", "path:map00940", - "path:map00941", - "path:map00943", "path:map00946", "path:map00950", "path:map00960", - "path:map00965", "path:map00966", "path:map00975", "path:map00980", @@ -616,16 +517,12 @@ "path:map00983", "path:map00984", "path:map00996", - "path:map00997", "path:map00998", "path:map00999", "path:map01040", "path:map01051", "path:map01053", - "path:map01055", - "path:map01056", "path:map01057", - "path:map01059", "path:map01100", "path:map01110", "path:map01120", @@ -640,101 +537,71 @@ "path:map01310", "path:map01320" ], - "cpd:C00247": [ - "path:map00051", - "path:map01100" + "cpd:C00751": [ + "path:map00100", + "path:map00909", + "path:map00996", + "path:map01100", + "path:map01110" ], - "cpd:C00861": [ - "path:map00051", + "cpd:C01885": [ + "path:map00100", + "path:map00561", "path:map01100", - "path:map01120" + "path:map01110" ], - "cpd:C02888": [ - "path:map00051", - "path:map01100" + "cpd:C01902": [ + "path:map00100", + "path:map01100", + "path:map01110" ], - "cpd:C00008": [ + "cpd:C00187": [ + "path:map00100", + "path:map00120", + "path:map00140", + "path:map00981", + "path:map00984", + "path:map00996", + "path:map01100", + "path:map01120" + ], + "cpd:C00139": [ "path:map00010", "path:map00020", "path:map00030", - "path:map00040", - "path:map00051", - "path:map00052", - "path:map00053", "path:map00061", - "path:map00071", - "path:map00074", - "path:map00220", - "path:map00230", - "path:map00240", - "path:map00250", - "path:map00254", + "path:map00100", + "path:map00140", "path:map00260", "path:map00261", "path:map00270", "path:map00280", - "path:map00300", - "path:map00310", - "path:map00330", - "path:map00332", - "path:map00333", - "path:map00340", "path:map00362", - "path:map00400", - "path:map00410", - "path:map00430", - "path:map00450", - "path:map00470", - "path:map00480", - "path:map00500", - "path:map00520", - "path:map00521", - "path:map00524", - "path:map00525", - "path:map00540", - "path:map00541", - "path:map00550", - "path:map00552", - "path:map00561", - "path:map00562", - "path:map00564", - "path:map00565", - "path:map00566", - "path:map00600", + "path:map00522", + "path:map00523", + "path:map00591", "path:map00620", + "path:map00622", + "path:map00623", "path:map00625", "path:map00627", "path:map00630", "path:map00640", - "path:map00642", "path:map00650", - "path:map00660", "path:map00670", "path:map00680", - "path:map00710", "path:map00720", - "path:map00730", - "path:map00740", - "path:map00750", "path:map00760", - "path:map00770", - "path:map00780", - "path:map00790", - "path:map00791", "path:map00860", "path:map00900", - "path:map00901", - "path:map00903", - "path:map00907", - "path:map00908", + "path:map00906", + "path:map00909", "path:map00910", "path:map00920", - "path:map00970", - "path:map00975", - "path:map00981", - "path:map00983", + "path:map00984", "path:map00998", - "path:map01051", + "path:map01040", + "path:map01059", "path:map01100", "path:map01110", "path:map01120", @@ -743,183 +610,133 @@ "path:map01212", "path:map01220", "path:map01230", - "path:map01232", "path:map01240", "path:map01250", "path:map01310", "path:map01320" ], - "cpd:C00424": [ - "path:map00051", - "path:map00620", - "path:map00640", + "cpd:C02530": [ + "path:map00100" + ], + "cpd:C00040": [ + "path:map00062", + "path:map00100", + "path:map00311", + "path:map00561", + "path:map00564", + "path:map00565", + "path:map00571", + "path:map00600", + "path:map00830", "path:map01100", - "path:map01120" + "path:map01110" ], - "cpd:C00615": [ - "path:map00010", - "path:map00030", - "path:map00051", - "path:map00052", - "path:map00053", - "path:map00500", - "path:map00520", + "cpd:C03428": [ + "path:map00100", + "path:map00906", + "path:map00909", "path:map01100", - "path:map01120" + "path:map01110" ], - "cpd:C01355": [ - "path:map00051" + "cpd:C05443": [ + "path:map00100", + "path:map01100", + "path:map01110" ], - "cpd:C00118": [ - "path:map00010", - "path:map00030", - "path:map00051", - "path:map00052", - "path:map00260", - "path:map00331", - "path:map00400", + "cpd:C03024": [ + "path:map00071", + "path:map00073", + "path:map00100", + "path:map00120", + "path:map00130", + "path:map00140", + "path:map00254", + "path:map00360", + "path:map00362", + "path:map00380", "path:map00402", - "path:map00403", - "path:map00562", - "path:map00566", - "path:map00680", - "path:map00710", - "path:map00730", - "path:map00750", - "path:map00900", + "path:map00404", + "path:map00460", + "path:map00590", + "path:map00627", + "path:map00643", + "path:map00830", + "path:map00860", + "path:map00901", + "path:map00902", + "path:map00903", + "path:map00904", + "path:map00905", + "path:map00906", + "path:map00908", + "path:map00909", + "path:map00940", + "path:map00941", + "path:map00943", + "path:map00944", + "path:map00945", + "path:map00950", + "path:map00960", + "path:map00966", + "path:map00981", + "path:map00982", + "path:map00983", + "path:map00996", + "path:map00997", + "path:map00998", "path:map00999", "path:map01100", "path:map01110", "path:map01120", - "path:map01200", - "path:map01230", + "path:map01210", + "path:map01220", "path:map01240" ], - "cpd:C02492": [ - "path:map00051", - "path:map01100" - ], - "cpd:C00035": [ - "path:map00010", - "path:map00020", - "path:map00051", - "path:map00230", - "path:map00240", - "path:map00250", - "path:map00310", - "path:map00500", - "path:map00510", - "path:map00520", - "path:map00525", - "path:map00620", - "path:map00640", - "path:map00680", - "path:map00770", - "path:map00860", + "cpd:C15816": [ + "path:map00100", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01232", - "path:map01240" - ], - "cpd:C00794": [ - "path:map00051", - "path:map00052", - "path:map01100" + "path:map01110" ], - "cpd:C01720": [ - "path:map00051", + "cpd:C00162": [ + "path:map00071", + "path:map00100", + "path:map00561", + "path:map00564", + "path:map00600", + "path:map00830", "path:map01100", - "path:map01120" + "path:map01110" ], - "cpd:C00125": [ - "path:map00010", - "path:map00020", - "path:map00040", - "path:map00051", - "path:map00053", - "path:map00260", - "path:map00430", - "path:map00450", - "path:map00620", - "path:map00625", - "path:map00650", - "path:map00680", - "path:map00720", - "path:map00760", - "path:map00910", - "path:map00920", + "cpd:C15783": [ + "path:map00100", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01240", - "path:map01310", - "path:map01320" + "path:map01110" ], - "cpd:C00016": [ - "path:map00030", - "path:map00051", - "path:map00071", - "path:map00253", - "path:map00280", - "path:map00310", - "path:map00332", - "path:map00333", - "path:map00361", - "path:map00362", - "path:map00380", - "path:map00404", - "path:map00500", - "path:map00524", - "path:map00564", - "path:map00592", - "path:map00620", - "path:map00624", - "path:map00626", - "path:map00643", - "path:map00650", - "path:map00740", + "cpd:C00448": [ + "path:map00100", + "path:map00550", + "path:map00860", + "path:map00900", "path:map00906", - "path:map00907", - "path:map00920", - "path:map00930", - "path:map00975", - "path:map01057", - "path:map01059", + "path:map00909", + "path:map00981", + "path:map00997", + "path:map00998", "path:map01100", "path:map01110", - "path:map01120", - "path:map01200", - "path:map01212", - "path:map01240", - "path:map01320" - ], - "cpd:C18096": [ - "path:map00051", - "path:map01100", - "path:map01120" + "path:map01240" ], - "cpd:C03979": [ - "path:map00051", + "cpd:C02141": [ + "path:map00100", "path:map01100", - "path:map01120" - ], - "cpd:C11544": [ - "path:map00051", - "path:map01100" + "path:map01110" ], - "cpd:C03117": [ - "path:map00051", - "path:map00541", + "cpd:C05440": [ + "path:map00100", "path:map01100", - "path:map01250" - ], - "cpd:C11516": [ - "path:map00051", - "path:map01100" + "path:map01110" ], - "cpd:C00006": [ + "cpd:C00004": [ "path:map00010", "path:map00020", "path:map00030", @@ -941,64 +758,63 @@ "path:map00232", "path:map00240", "path:map00250", - "path:map00253", "path:map00254", "path:map00260", "path:map00261", "path:map00270", + "path:map00280", "path:map00290", "path:map00300", "path:map00310", "path:map00330", - "path:map00331", - "path:map00332", "path:map00333", + "path:map00340", "path:map00350", "path:map00360", "path:map00361", "path:map00362", "path:map00363", "path:map00364", + "path:map00365", "path:map00380", "path:map00400", - "path:map00403", + "path:map00401", "path:map00404", + "path:map00405", "path:map00410", "path:map00430", "path:map00440", - "path:map00450", - "path:map00460", "path:map00470", - "path:map00480", "path:map00510", "path:map00520", "path:map00521", - "path:map00522", "path:map00523", "path:map00524", + "path:map00525", "path:map00541", "path:map00550", "path:map00561", "path:map00562", "path:map00564", - "path:map00565", "path:map00566", "path:map00590", "path:map00591", "path:map00592", - "path:map00600", "path:map00620", "path:map00621", "path:map00622", "path:map00623", "path:map00624", + "path:map00625", "path:map00626", "path:map00627", "path:map00630", "path:map00633", "path:map00640", + "path:map00642", "path:map00643", "path:map00650", + "path:map00660", "path:map00670", "path:map00680", "path:map00710", @@ -1007,7 +823,7 @@ "path:map00750", "path:map00760", "path:map00770", - "path:map00780", + "path:map00785", "path:map00790", "path:map00830", "path:map00860", @@ -1017,19 +833,16 @@ "path:map00903", "path:map00904", "path:map00905", + "path:map00906", "path:map00907", - "path:map00908", "path:map00909", "path:map00910", "path:map00920", "path:map00930", "path:map00940", - "path:map00941", - "path:map00943", "path:map00946", "path:map00950", "path:map00960", - "path:map00965", "path:map00966", "path:map00975", "path:map00980", @@ -1038,14 +851,12 @@ "path:map00983", "path:map00984", "path:map00996", - "path:map00997", "path:map00998", "path:map00999", "path:map01040", - "path:map01055", - "path:map01056", + "path:map01051", + "path:map01053", "path:map01057", - "path:map01059", "path:map01100", "path:map01110", "path:map01120", @@ -1060,218 +871,112 @@ "path:map01310", "path:map01320" ], - "cpd:C00020": [ - "path:map00010", - "path:map00030", - "path:map00051", - "path:map00061", - "path:map00071", - "path:map00074", - "path:map00120", - "path:map00130", - "path:map00220", + "cpd:C22136": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C01561": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C00058": [ + "path:map00100", + "path:map00140", "path:map00230", - "path:map00250", - "path:map00253", - "path:map00261", + "path:map00240", "path:map00270", - "path:map00280", - "path:map00300", - "path:map00311", - "path:map00331", - "path:map00332", - "path:map00333", - "path:map00350", - "path:map00360", + "path:map00340", "path:map00362", - "path:map00364", - "path:map00365", + "path:map00363", "path:map00380", - "path:map00401", - "path:map00404", - "path:map00405", - "path:map00410", - "path:map00430", + "path:map00403", "path:map00440", - "path:map00450", "path:map00460", - "path:map00470", - "path:map00500", - "path:map00524", "path:map00541", - "path:map00550", - "path:map00552", - "path:map00592", "path:map00620", + "path:map00622", "path:map00624", - "path:map00627", + "path:map00625", "path:map00630", "path:map00640", - "path:map00642", "path:map00650", - "path:map00660", + "path:map00670", "path:map00680", - "path:map00710", "path:map00720", "path:map00730", "path:map00740", "path:map00760", - "path:map00770", - "path:map00780", - "path:map00785", "path:map00790", "path:map00860", + "path:map00901", + "path:map00910", + "path:map00930", + "path:map00950", + "path:map01100", + "path:map01110", + "path:map01120", + "path:map01200", + "path:map01220", + "path:map01232", + "path:map01240" + ], + "cpd:C03161": [ + "path:map00071", + "path:map00073", + "path:map00100", + "path:map00120", + "path:map00130", + "path:map00140", + "path:map00254", + "path:map00360", + "path:map00362", + "path:map00380", + "path:map00402", + "path:map00404", + "path:map00460", + "path:map00590", + "path:map00627", + "path:map00643", + "path:map00830", + "path:map00860", + "path:map00901", + "path:map00902", "path:map00903", "path:map00904", - "path:map00907", + "path:map00905", + "path:map00906", "path:map00908", - "path:map00920", - "path:map00930", + "path:map00909", "path:map00940", + "path:map00941", + "path:map00943", + "path:map00944", + "path:map00945", + "path:map00950", "path:map00960", - "path:map00970", - "path:map00975", + "path:map00966", + "path:map00981", + "path:map00982", "path:map00983", - "path:map00984", "path:map00996", "path:map00997", "path:map00998", - "path:map01053", - "path:map01059", + "path:map00999", "path:map01100", "path:map01110", "path:map01120", - "path:map01200", - "path:map01212", + "path:map01210", "path:map01220", - "path:map01230", - "path:map01232", - "path:map01240", - "path:map01250", - "path:map01320" - ], - "cpd:C00636": [ - "path:map00051", - "path:map00053", - "path:map00520", - "path:map00541", - "path:map01059", - "path:map01100", - "path:map01110", - "path:map01240", - "path:map01250" - ], - "cpd:C00507": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C00665": [ - "path:map00051", - "path:map01100" - ], - "cpd:C03267": [ - "path:map00051", - "path:map01100" - ], - "cpd:C02985": [ - "path:map00051", - "path:map00520", - "path:map01100", - "path:map01250" - ], - "cpd:C00258": [ - "path:map00030", - "path:map00051", - "path:map00260", - "path:map00561", - "path:map00630", - "path:map00680", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200" - ], - "cpd:C00159": [ - "path:map00051", - "path:map00052", - "path:map00510", - "path:map00513", - "path:map00520", - "path:map01100", - "path:map01250" - ], - "cpd:C04261": [ - "path:map00010", - "path:map00030", - "path:map00051", - "path:map00052", - "path:map00053", - "path:map00500", - "path:map00520", - "path:map01100", - "path:map01120" - ], - "cpd:C00644": [ - "path:map00051", - "path:map01100" - ], - "cpd:C01721": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C02431": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C01096": [ - "path:map00051", - "path:map01100" - ], - "cpd:C02962": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C00186": [ - "path:map00010", - "path:map00051", - "path:map00620", - "path:map00640", - "path:map00643", - "path:map01100", - "path:map01110", - "path:map01120" - ], - "cpd:C02977": [ - "path:map00051", - "path:map00541", - "path:map01100", - "path:map01250" - ], - "cpd:C20836": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C00976": [ - "path:map00051", - "path:map00520", - "path:map01100", - "path:map01250" - ], - "cpd:C00464": [ - "path:map00051", - "path:map01100" + "path:map01240" ], - "cpd:C01099": [ - "path:map00051", + "cpd:C11523": [ + "path:map00100", "path:map01100", - "path:map01120" + "path:map01110" ], - "cpd:C00001": [ + "cpd:C00006": [ "path:map00010", "path:map00020", "path:map00030", @@ -1298,30 +1003,23 @@ "path:map00260", "path:map00261", "path:map00270", - "path:map00280", "path:map00290", "path:map00300", "path:map00310", - "path:map00311", "path:map00330", "path:map00331", "path:map00332", "path:map00333", - "path:map00340", "path:map00350", "path:map00360", "path:map00361", "path:map00362", "path:map00363", "path:map00364", - "path:map00365", "path:map00380", "path:map00400", - "path:map00401", - "path:map00402", "path:map00403", "path:map00404", - "path:map00405", "path:map00410", "path:map00430", "path:map00440", @@ -1329,23 +1027,16 @@ "path:map00460", "path:map00470", "path:map00480", - "path:map00500", "path:map00510", - "path:map00513", "path:map00520", "path:map00521", "path:map00522", "path:map00523", "path:map00524", - "path:map00525", - "path:map00531", - "path:map00540", "path:map00541", "path:map00550", - "path:map00552", "path:map00561", "path:map00562", - "path:map00563", "path:map00564", "path:map00565", "path:map00566", @@ -1353,35 +1044,28 @@ "path:map00591", "path:map00592", "path:map00600", - "path:map00603", - "path:map00604", "path:map00620", "path:map00621", "path:map00622", "path:map00623", "path:map00624", - "path:map00625", "path:map00626", "path:map00627", "path:map00630", "path:map00633", "path:map00640", - "path:map00642", "path:map00643", "path:map00650", - "path:map00660", "path:map00670", "path:map00680", "path:map00710", "path:map00720", - "path:map00730", "path:map00740", "path:map00750", "path:map00760", "path:map00770", "path:map00780", "path:map00790", - "path:map00791", "path:map00830", "path:map00860", "path:map00900", @@ -1390,7 +1074,6 @@ "path:map00903", "path:map00904", "path:map00905", - "path:map00906", "path:map00907", "path:map00908", "path:map00909", @@ -1400,14 +1083,11 @@ "path:map00940", "path:map00941", "path:map00943", - "path:map00944", - "path:map00945", "path:map00946", "path:map00950", "path:map00960", "path:map00965", "path:map00966", - "path:map00970", "path:map00975", "path:map00980", "path:map00981", @@ -1419,8 +1099,6 @@ "path:map00998", "path:map00999", "path:map01040", - "path:map01051", - "path:map01053", "path:map01055", "path:map01056", "path:map01057", @@ -1439,90 +1117,120 @@ "path:map01310", "path:map01320" ], - "cpd:C00027": [ + "cpd:C00641": [ + "path:map00100", + "path:map00440", + "path:map00540", + "path:map00552", + "path:map00561", + "path:map00562", + "path:map00563", + "path:map00564", + "path:map00566", + "path:map00600", + "path:map01100", + "path:map01110" + ], + "cpd:C01189": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C05103": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C11455": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C15776": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C00030": [ "path:map00030", - "path:map00040", - "path:map00051", - "path:map00052", "path:map00053", - "path:map00230", - "path:map00232", - "path:map00250", + "path:map00071", + "path:map00100", + "path:map00120", + "path:map00130", + "path:map00140", + "path:map00240", "path:map00260", - "path:map00261", - "path:map00270", "path:map00280", - "path:map00310", - "path:map00311", "path:map00330", + "path:map00332", "path:map00340", - "path:map00350", "path:map00360", "path:map00362", "path:map00365", - "path:map00380", - "path:map00400", "path:map00404", - "path:map00405", - "path:map00410", "path:map00440", + "path:map00450", + "path:map00460", "path:map00470", - "path:map00480", + "path:map00523", "path:map00524", + "path:map00561", "path:map00564", + "path:map00590", + "path:map00592", "path:map00620", - "path:map00626", + "path:map00625", "path:map00627", "path:map00630", - "path:map00640", - "path:map00660", + "path:map00642", + "path:map00650", "path:map00670", "path:map00680", "path:map00730", "path:map00750", "path:map00760", "path:map00770", + "path:map00790", "path:map00830", "path:map00860", - "path:map00900", "path:map00901", + "path:map00903", + "path:map00905", "path:map00906", + "path:map00907", + "path:map00908", "path:map00910", "path:map00920", - "path:map00930", - "path:map00950", - "path:map00960", "path:map00981", - "path:map00982", - "path:map00983", "path:map00984", "path:map00997", "path:map00998", - "path:map00999", - "path:map01040", - "path:map01055", - "path:map01057", + "path:map01059", "path:map01100", "path:map01110", "path:map01120", "path:map01200", - "path:map01212", - "path:map01232", - "path:map01240" + "path:map01220", + "path:map01240", + "path:map01250", + "path:map01310", + "path:map01320" ], - "cpd:C00003": [ - "path:map00010", - "path:map00020", + "cpd:C11508": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C00007": [ "path:map00030", "path:map00040", "path:map00051", "path:map00052", "path:map00053", "path:map00061", - "path:map00062", "path:map00071", "path:map00073", - "path:map00074", "path:map00100", "path:map00120", "path:map00130", @@ -1532,16 +1240,17 @@ "path:map00232", "path:map00240", "path:map00250", + "path:map00253", "path:map00254", "path:map00260", "path:map00261", "path:map00270", "path:map00280", - "path:map00290", - "path:map00300", "path:map00310", + "path:map00311", "path:map00330", - "path:map00333", + "path:map00331", + "path:map00332", "path:map00340", "path:map00350", "path:map00360", @@ -1553,27 +1262,30 @@ "path:map00380", "path:map00400", "path:map00401", + "path:map00402", + "path:map00403", "path:map00404", "path:map00405", "path:map00410", "path:map00430", "path:map00440", + "path:map00460", "path:map00470", - "path:map00510", - "path:map00520", - "path:map00521", + "path:map00480", + "path:map00522", "path:map00523", "path:map00524", "path:map00525", + "path:map00540", "path:map00541", - "path:map00550", - "path:map00561", "path:map00562", "path:map00564", + "path:map00565", "path:map00566", "path:map00590", "path:map00591", "path:map00592", + "path:map00600", "path:map00620", "path:map00621", "path:map00622", @@ -1591,15 +1303,14 @@ "path:map00660", "path:map00670", "path:map00680", - "path:map00710", - "path:map00720", "path:map00730", "path:map00740", "path:map00750", "path:map00760", "path:map00770", - "path:map00785", + "path:map00780", "path:map00790", + "path:map00791", "path:map00830", "path:map00860", "path:map00900", @@ -1610,14 +1321,19 @@ "path:map00905", "path:map00906", "path:map00907", + "path:map00908", "path:map00909", "path:map00910", "path:map00920", "path:map00930", "path:map00940", - "path:map00946", + "path:map00941", + "path:map00943", + "path:map00944", + "path:map00945", "path:map00950", "path:map00960", + "path:map00965", "path:map00966", "path:map00975", "path:map00980", @@ -1626,12 +1342,13 @@ "path:map00983", "path:map00984", "path:map00996", + "path:map00997", "path:map00998", "path:map00999", "path:map01040", - "path:map01051", - "path:map01053", + "path:map01055", "path:map01057", + "path:map01059", "path:map01100", "path:map01110", "path:map01120", @@ -1646,33 +1363,172 @@ "path:map01310", "path:map01320" ], - "cpd:C06192": [ - "path:map00051" + "cpd:C07712": [ + "path:map00100", + "path:map01100" ], - "cpd:C00013": [ + "cpd:C22121": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C01802": [ + "path:map00100", + "path:map01100" + ], + "cpd:C00996": [ + "path:map00100", + "path:map00541", + "path:map00565", + "path:map00591", + "path:map00600", + "path:map01040", + "path:map01100", + "path:map01110", + "path:map01212", + "path:map01250" + ], + "cpd:C00999": [ + "path:map00100", + "path:map00541", + "path:map00565", + "path:map00591", + "path:map00600", + "path:map01040", + "path:map01100", + "path:map01110", + "path:map01212", + "path:map01250" + ], + "cpd:C00667": [ + "path:map00100", + "path:map00120", + "path:map00140", + "path:map00830", + "path:map00981", + "path:map01100" + ], + "cpd:C01673": [ + "path:map00100", + "path:map01100", + "path:map07047" + ], + "cpd:C15780": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C15915": [ + "path:map00100" + ], + "cpd:C22112": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C03845": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C05437": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C05439": [ + "path:map00100", + "path:map01100" + ], + "cpd:C22116": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C04525": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C22119": [ + "path:map00100", + "path:map01100", + "path:map01110" + ], + "cpd:C00138": [ "path:map00010", + "path:map00020", "path:map00030", - "path:map00040", - "path:map00051", - "path:map00052", - "path:map00053", "path:map00061", + "path:map00100", + "path:map00140", + "path:map00260", + "path:map00261", + "path:map00270", + "path:map00280", + "path:map00362", + "path:map00522", + "path:map00523", + "path:map00591", + "path:map00620", + "path:map00622", + "path:map00623", + "path:map00625", + "path:map00627", + "path:map00630", + "path:map00640", + "path:map00650", + "path:map00670", + "path:map00680", + "path:map00720", + "path:map00760", + "path:map00860", + "path:map00900", + "path:map00906", + "path:map00909", + "path:map00910", + "path:map00920", + "path:map00984", + "path:map00998", + "path:map01040", + "path:map01059", + "path:map01100", + "path:map01110", + "path:map01120", + "path:map01200", + "path:map01210", + "path:map01212", + "path:map01220", + "path:map01230", + "path:map01240", + "path:map01250", + "path:map01310", + "path:map01320" + ], + "cpd:C00010": [ + "path:map00010", + "path:map00020", + "path:map00061", + "path:map00062", "path:map00071", + "path:map00073", "path:map00074", "path:map00100", "path:map00120", "path:map00130", "path:map00220", - "path:map00230", - "path:map00240", "path:map00250", "path:map00253", + "path:map00254", + "path:map00260", "path:map00261", "path:map00270", "path:map00280", + "path:map00290", "path:map00300", + "path:map00310", "path:map00311", - "path:map00331", + "path:map00330", "path:map00332", "path:map00333", "path:map00340", @@ -1683,66 +1539,63 @@ "path:map00365", "path:map00380", "path:map00400", - "path:map00401", - "path:map00403", - "path:map00404", "path:map00405", "path:map00410", "path:map00430", "path:map00440", - "path:map00450", - "path:map00460", "path:map00470", - "path:map00500", - "path:map00515", + "path:map00480", "path:map00520", - "path:map00521", + "path:map00522", "path:map00523", - "path:map00524", - "path:map00525", + "path:map00531", "path:map00541", - "path:map00550", - "path:map00552", "path:map00561", "path:map00562", + "path:map00563", "path:map00564", + "path:map00565", "path:map00566", + "path:map00571", "path:map00592", + "path:map00600", "path:map00620", + "path:map00621", + "path:map00622", + "path:map00623", "path:map00624", + "path:map00625", + "path:map00626", "path:map00627", "path:map00630", + "path:map00633", "path:map00640", "path:map00642", "path:map00650", "path:map00660", - "path:map00670", "path:map00680", - "path:map00710", "path:map00720", - "path:map00730", - "path:map00740", - "path:map00760", "path:map00770", "path:map00780", "path:map00785", - "path:map00790", + "path:map00830", "path:map00860", "path:map00900", "path:map00901", - "path:map00902", "path:map00903", "path:map00904", - "path:map00906", "path:map00907", - "path:map00908", - "path:map00909", "path:map00920", "path:map00930", "path:map00940", "path:map00941", + "path:map00942", "path:map00943", - "path:map00970", + "path:map00944", + "path:map00945", + "path:map00950", + "path:map00960", + "path:map00966", "path:map00975", "path:map00983", "path:map00984", @@ -1750,45 +1603,29 @@ "path:map00997", "path:map00998", "path:map00999", - "path:map01053", + "path:map01040", + "path:map01051", + "path:map01055", + "path:map01056", "path:map01059", "path:map01100", "path:map01110", "path:map01120", "path:map01200", + "path:map01210", "path:map01212", "path:map01220", "path:map01230", - "path:map01232", "path:map01240", "path:map01250", "path:map01320" ], - "cpd:C00126": [ - "path:map00010", - "path:map00020", - "path:map00040", - "path:map00051", - "path:map00053", - "path:map00260", - "path:map00430", - "path:map00450", - "path:map00620", - "path:map00625", - "path:map00650", - "path:map00680", - "path:map00720", - "path:map00760", - "path:map00910", - "path:map00920", + "cpd:C01753": [ + "path:map00100", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01240", - "path:map01310", - "path:map01320" + "path:map01110" ], - "cpd:C00004": [ + "cpd:C00001": [ "path:map00010", "path:map00020", "path:map00030", @@ -1810,6 +1647,7 @@ "path:map00232", "path:map00240", "path:map00250", + "path:map00253", "path:map00254", "path:map00260", "path:map00261", @@ -1818,7 +1656,10 @@ "path:map00290", "path:map00300", "path:map00310", + "path:map00311", "path:map00330", + "path:map00331", + "path:map00332", "path:map00333", "path:map00340", "path:map00350", @@ -1831,27 +1672,43 @@ "path:map00380", "path:map00400", "path:map00401", + "path:map00402", + "path:map00403", "path:map00404", "path:map00405", "path:map00410", "path:map00430", "path:map00440", + "path:map00450", + "path:map00460", "path:map00470", + "path:map00480", + "path:map00500", "path:map00510", + "path:map00513", "path:map00520", "path:map00521", + "path:map00522", "path:map00523", "path:map00524", "path:map00525", + "path:map00531", + "path:map00540", "path:map00541", "path:map00550", + "path:map00552", "path:map00561", "path:map00562", + "path:map00563", "path:map00564", + "path:map00565", "path:map00566", "path:map00590", "path:map00591", "path:map00592", + "path:map00600", + "path:map00603", + "path:map00604", "path:map00620", "path:map00621", "path:map00622", @@ -1871,12 +1728,14 @@ "path:map00680", "path:map00710", "path:map00720", + "path:map00730", "path:map00740", "path:map00750", "path:map00760", "path:map00770", - "path:map00785", + "path:map00780", "path:map00790", + "path:map00791", "path:map00830", "path:map00860", "path:map00900", @@ -1887,15 +1746,22 @@ "path:map00905", "path:map00906", "path:map00907", + "path:map00908", "path:map00909", "path:map00910", "path:map00920", "path:map00930", "path:map00940", + "path:map00941", + "path:map00943", + "path:map00944", + "path:map00945", "path:map00946", "path:map00950", "path:map00960", + "path:map00965", "path:map00966", + "path:map00970", "path:map00975", "path:map00980", "path:map00981", @@ -1903,12 +1769,16 @@ "path:map00983", "path:map00984", "path:map00996", + "path:map00997", "path:map00998", "path:map00999", "path:map01040", "path:map01051", "path:map01053", + "path:map01055", + "path:map01056", "path:map01057", + "path:map01059", "path:map01100", "path:map01110", "path:map01120", @@ -1923,61 +1793,12 @@ "path:map01310", "path:map01320" ], - "cpd:C01934": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C00111": [ - "path:map00010", - "path:map00030", - "path:map00040", - "path:map00051", - "path:map00052", - "path:map00561", - "path:map00562", - "path:map00564", - "path:map00566", - "path:map00630", - "path:map00640", - "path:map00680", - "path:map00710", - "path:map00760", - "path:map00997", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01230", - "path:map01240" - ], - "cpd:C01131": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C00267": [ - "path:map00010", - "path:map00051", - "path:map00052", - "path:map00500", - "path:map00520", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01250" - ], - "cpd:C01768": [ - "path:map00051", - "path:map01100" - ], - "cpd:C03827": [ - "path:map00051", + "cpd:C21106": [ + "path:map00100", "path:map01100", - "path:map01120" + "path:map01110" ], - "cpd:C00005": [ + "cpd:C00080": [ "path:map00010", "path:map00020", "path:map00030", @@ -2004,6 +1825,7 @@ "path:map00260", "path:map00261", "path:map00270", + "path:map00280", "path:map00290", "path:map00300", "path:map00310", @@ -2011,16 +1833,20 @@ "path:map00331", "path:map00332", "path:map00333", + "path:map00340", "path:map00350", "path:map00360", "path:map00361", "path:map00362", "path:map00363", "path:map00364", + "path:map00365", "path:map00380", "path:map00400", + "path:map00401", "path:map00403", "path:map00404", + "path:map00405", "path:map00410", "path:map00430", "path:map00440", @@ -2034,6 +1860,7 @@ "path:map00522", "path:map00523", "path:map00524", + "path:map00525", "path:map00541", "path:map00550", "path:map00561", @@ -2050,22 +1877,27 @@ "path:map00622", "path:map00623", "path:map00624", + "path:map00625", "path:map00626", "path:map00627", "path:map00630", "path:map00633", "path:map00640", + "path:map00642", "path:map00643", "path:map00650", + "path:map00660", "path:map00670", "path:map00680", "path:map00710", "path:map00720", + "path:map00730", "path:map00740", "path:map00750", "path:map00760", "path:map00770", "path:map00780", + "path:map00785", "path:map00790", "path:map00830", "path:map00860", @@ -2075,6 +1907,7 @@ "path:map00903", "path:map00904", "path:map00905", + "path:map00906", "path:map00907", "path:map00908", "path:map00909", @@ -2100,6 +1933,8 @@ "path:map00998", "path:map00999", "path:map01040", + "path:map01051", + "path:map01053", "path:map01055", "path:map01056", "path:map01057", @@ -2118,304 +1953,21 @@ "path:map01310", "path:map01320" ], - "cpd:C05392": [ - "path:map00051", - "path:map01100" + "cpd:C01054": [ + "path:map00100", + "path:map00909", + "path:map00996", + "path:map00999", + "path:map01100", + "path:map01110" ], - "cpd:C00022": [ - "path:map00010", - "path:map00020", - "path:map00030", - "path:map00040", - "path:map00051", - "path:map00052", - "path:map00053", - "path:map00130", - "path:map00220", - "path:map00250", - "path:map00260", - "path:map00261", - "path:map00270", - "path:map00280", - "path:map00290", - "path:map00300", - "path:map00310", - "path:map00330", - "path:map00333", - "path:map00340", - "path:map00350", - "path:map00360", - "path:map00362", - "path:map00380", - "path:map00400", - "path:map00405", - "path:map00410", - "path:map00430", - "path:map00440", - "path:map00450", - "path:map00470", - "path:map00521", - "path:map00541", - "path:map00561", - "path:map00566", - "path:map00620", - "path:map00621", - "path:map00622", - "path:map00624", - "path:map00626", - "path:map00630", - "path:map00633", - "path:map00640", - "path:map00650", - "path:map00660", - "path:map00680", - "path:map00710", - "path:map00720", - "path:map00730", - "path:map00750", - "path:map00760", - "path:map00770", - "path:map00785", - "path:map00790", - "path:map00860", - "path:map00900", - "path:map00960", - "path:map00966", - "path:map00983", - "path:map00984", - "path:map00996", - "path:map01053", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01210", - "path:map01220", - "path:map01230", - "path:map01240" - ], - "cpd:C20781": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C00095": [ - "path:map00051", - "path:map00052", - "path:map00500", - "path:map00520", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01250" - ], - "cpd:C00085": [ - "path:map00010", - "path:map00030", - "path:map00051", - "path:map00052", - "path:map00250", - "path:map00500", - "path:map00520", - "path:map00680", - "path:map00710", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01230", - "path:map01240", - "path:map01250" - ], - "cpd:C00144": [ - "path:map00051", - "path:map00230", - "path:map00500", - "path:map00680", - "path:map00860", - "path:map01100", - "path:map01120", - "path:map01232", - "path:map01240" - ], - "cpd:C00325": [ - "path:map00051", - "path:map00520", - "path:map00541", - "path:map01100", - "path:map01250" - ], - "cpd:C02991": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C18028": [ - "path:map00051", - "path:map01100", - "path:map01120" - ], - "cpd:C01352": [ - "path:map00030", - "path:map00051", - "path:map00071", - "path:map00253", - "path:map00280", - "path:map00310", - "path:map00332", - "path:map00333", - "path:map00361", - "path:map00362", - "path:map00380", - "path:map00404", - "path:map00500", - "path:map00524", - "path:map00564", - "path:map00592", - "path:map00620", - "path:map00624", - "path:map00626", - "path:map00643", - "path:map00650", - "path:map00740", - "path:map00906", - "path:map00907", - "path:map00920", - "path:map00930", - "path:map00975", - "path:map01057", - "path:map01059", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01212", - "path:map01240", - "path:map01320" - ], - "cpd:C01019": [ - "path:map00051", - "path:map00520", - "path:map01100", - "path:map01120", - "path:map01250" - ], - "cpd:C00010": [ - "path:map00010", - "path:map00020", - "path:map00061", - "path:map00062", - "path:map00071", - "path:map00073", - "path:map00074", + "cpd:C01164": [ "path:map00100", - "path:map00120", - "path:map00130", - "path:map00220", - "path:map00250", - "path:map00253", - "path:map00254", - "path:map00260", - "path:map00261", - "path:map00270", - "path:map00280", - "path:map00290", - "path:map00300", - "path:map00310", - "path:map00311", - "path:map00330", - "path:map00332", - "path:map00333", - "path:map00340", - "path:map00350", - "path:map00360", - "path:map00362", - "path:map00364", - "path:map00365", - 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"path:map00943", - "path:map00944", - "path:map00945", - "path:map00950", - "path:map00960", - "path:map00966", - "path:map00975", - "path:map00983", - "path:map00984", - "path:map00996", - "path:map00997", - "path:map00998", - "path:map00999", - "path:map01040", - "path:map01051", - "path:map01055", - "path:map01056", - "path:map01059", + "path:map00981", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01210", - "path:map01212", - "path:map01220", - "path:map01230", - "path:map01240", - "path:map01250", - "path:map01320" + "path:map01110" ], - "cpd:C00019": [ + "cpd:C00021": [ "path:map00100", "path:map00130", "path:map00140", @@ -2423,7 +1975,6 @@ "path:map00253", "path:map00254", "path:map00260", - "path:map00261", "path:map00270", "path:map00310", "path:map00311", @@ -2439,7 +1990,6 @@ "path:map00405", "path:map00440", "path:map00450", - "path:map00470", "path:map00522", "path:map00523", "path:map00524", @@ -2448,18 +1998,13 @@ "path:map00592", "path:map00624", "path:map00670", - "path:map00680", - "path:map00730", "path:map00760", "path:map00780", - "path:map00785", - "path:map00790", "path:map00860", "path:map00900", "path:map00901", "path:map00902", "path:map00906", - "path:map00908", "path:map00920", "path:map00940", "path:map00941", @@ -2486,61 +2031,13 @@ "path:map01240", "path:map01250" ], - "cpd:C02679": [ - "path:map00061", - "path:map00333", - "path:map01100", - "path:map01110" - ], - "cpd:C21139": [ - "path:map00333", - "path:map01100", - "path:map01110" - ], - "cpd:C00148": [ - "path:map00330", - "path:map00332", - "path:map00333", - "path:map00401", - "path:map00404", - "path:map00470", - "path:map00970", - "path:map01100", - "path:map01110", - "path:map01230" - ], - "cpd:C21574": [ - "path:map00333", + "cpd:C01724": [ + "path:map00100", "path:map01100", "path:map01110" ], - "cpd:C00229": [ - "path:map00061", - "path:map00071", - "path:map00074", - "path:map00254", - "path:map00270", - "path:map00333", - "path:map00524", - "path:map00540", - "path:map00561", - 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"path:map00410", - "path:map00623", - "path:map00630", - "path:map00640", - "path:map00670", - "path:map00680", + "cpd:C05108": [ + "path:map00100", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01220" + "path:map01110" ], - "cpd:C21138": [ - "path:map00333", + "cpd:C01694": [ + "path:map00100", "path:map01100", "path:map01110" ], - "cpd:C12023": [ - "path:map00333", + "cpd:C00205": [ + "path:map00100", + "path:map00830", "path:map01100", "path:map01110" ], - "cpd:C00021": [ + "cpd:C15808": [ "path:map00100", - "path:map00130", - "path:map00140", - "path:map00232", - "path:map00253", - "path:map00254", - "path:map00260", - "path:map00270", - "path:map00310", - "path:map00311", - "path:map00330", - "path:map00332", - "path:map00333", - "path:map00340", - "path:map00350", - "path:map00380", - "path:map00401", - "path:map00402", - "path:map00404", - "path:map00405", - "path:map00440", - "path:map00450", - "path:map00522", - "path:map00523", - "path:map00524", - 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"path:map00975", - "path:map00998", - "path:map01053", - "path:map01054", + "cpd:C05925": [ + "path:map00790", + "path:map01100", + "path:map01240" + ], + "cpd:C00931": [ + "path:map00860", "path:map01100", "path:map01110", "path:map01120", - "path:map01200", - "path:map01230", "path:map01240" ], - "cpd:C21571": [ - "path:map00333", + "cpd:C19673": [ + "path:map00780", "path:map01100", - "path:map01110" + "path:map01240" ], - "cpd:C21570": [ - "path:map00333", + "cpd:C06506": [ + "path:map00860", "path:map01100", - "path:map01110" + "path:map01240" ], - "cpd:C00161": [ + "cpd:C00035": [ + "path:map00010", + "path:map00020", + "path:map00051", + "path:map00230", + "path:map00240", "path:map00250", "path:map00310", - "path:map00333", - "path:map00380", - "path:map00400", - "path:map00470", - "path:map00966", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01210" - ], - "cpd:C21097": [ - "path:map00333", - "path:map00401", - "path:map01059", - "path:map01100", - "path:map01110" - ], - "cpd:C00083": [ - "path:map00061", - "path:map00062", - "path:map00074", - "path:map00253", - "path:map00254", - "path:map00332", - "path:map00333", - "path:map00405", - "path:map00410", - "path:map00522", + "path:map00500", + "path:map00510", + "path:map00520", + "path:map00525", "path:map00620", "path:map00640", - "path:map00720", - "path:map00901", - "path:map00941", - "path:map00942", - "path:map00943", - "path:map00944", - "path:map00945", - "path:map00960", - "path:map00996", - "path:map00997", - "path:map00998", - "path:map00999", - "path:map01040", - "path:map01055", - "path:map01056", - "path:map01059", + "path:map00680", + "path:map00770", + "path:map00860", "path:map01100", "path:map01110", "path:map01120", "path:map01200", - "path:map01212" + "path:map01232", + "path:map01240" ], - "cpd:C21565": [ - "path:map00333", + "cpd:C00315": [ + "path:map00270", + "path:map00330", + "path:map00410", + "path:map00480", + "path:map00770", + "path:map00780", + "path:map00940", + "path:map00975", "path:map01100", - "path:map01110" + "path:map01110", + "path:map01240" ], - "cpd:C21568": [ - "path:map00333", + "cpd:C15670": [ + "path:map00860", "path:map01100", - "path:map01110" + "path:map01110", + "path:map01240" ], - "cpd:C04570": [ - "path:map00260", - "path:map00310", - "path:map00333", - "path:map00362", - "path:map00380", - "path:map00401", - "path:map00410", - "path:map00623", - "path:map00630", - "path:map00640", - "path:map00670", + "cpd:C20954": [ "path:map00680", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01220" + "path:map01240" ], - "cpd:C12483": [ - "path:map00333", + "cpd:C01179": [ + "path:map00130", + "path:map00261", + "path:map00350", + "path:map00400", "path:map00401", - "path:map01100", - "path:map01110" - ], - "cpd:C00052": [ - "path:map00052", - "path:map00310", - "path:map00514", - "path:map00520", - "path:map00552", - "path:map00561", - "path:map00565", - "path:map00600", - "path:map00944", - "path:map00999", + "path:map00950", + "path:map01055", "path:map01100", "path:map01110", - "path:map01250" - ], - "cpd:C06365": [ - "path:map00561", - "path:map01100" - ], - "cpd:C00124": [ - "path:map00052", - "path:map00531", - "path:map00561", - "path:map00600", - "path:map00603", - "path:map00604", - "path:map01100" - ], - "cpd:C06041": [ - "path:map00552", - "path:map00561", - "path:map01100" - ], - "cpd:C00344": [ - "path:map00552", - "path:map00561", - "path:map00564", - "path:map01100" + "path:map01210", + "path:map01230", + "path:map01240" ], - "cpd:C00040": [ - "path:map00062", - "path:map00100", - "path:map00311", - "path:map00561", - "path:map00564", - "path:map00565", - "path:map00571", - "path:map00600", - "path:map00830", + "cpd:C03033": [ + "path:map00040", + "path:map00053", "path:map01100", - "path:map01110" - ], - "cpd:C20898": [ - "path:map00561", - "path:map01100" + "path:map01240" ], - "cpd:C00055": [ - "path:map00240", - "path:map00260", - "path:map00440", - "path:map00540", - "path:map00552", - "path:map00561", - "path:map00562", - "path:map00564", - "path:map00565", - "path:map00600", - "path:map00770", - "path:map00900", - "path:map00998", + "cpd:C16244": [ + "path:map00860", "path:map01100", - "path:map01110", - "path:map01232", "path:map01240" ], - "cpd:C00015": [ + "cpd:C00029": [ "path:map00040", "path:map00052", "path:map00053", "path:map00130", - "path:map00140", - "path:map00240", - "path:map00310", "path:map00350", "path:map00380", "path:map00402", @@ -3132,15 +2374,11 @@ "path:map00520", "path:map00524", "path:map00525", - "path:map00540", "path:map00541", - "path:map00550", + "path:map00552", "path:map00561", - "path:map00565", "path:map00566", "path:map00600", - "path:map00830", - "path:map00860", "path:map00901", "path:map00902", "path:map00906", @@ -3154,401 +2392,544 @@ "path:map00960", "path:map00965", "path:map00966", - "path:map00980", - "path:map00982", - "path:map00983", "path:map00999", "path:map01051", "path:map01100", "path:map01110", + "path:map01120", "path:map01210", - "path:map01232", "path:map01240", "path:map01250" ], - 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"cpd:C16301": [ + "cpd:C16302": [ "path:map00942" ], - "cpd:C16302": [ + "cpd:C12141": [ "path:map00942" ], - "cpd:C08639": [ + "cpd:C16295": [ "path:map00942" ], - "cpd:C19762": [ + "cpd:C16307": [ "path:map00942" ], - "cpd:C12646": [ + "cpd:C20489": [ "path:map00942" ], - "cpd:C12643": [ + "cpd:C12642": [ + "path:map00942" + ], + "cpd:C20491": [ "path:map00942" ], "cpd:C20469": [ "path:map00942" ], - "cpd:C20470": [ + "cpd:C16289": [ "path:map00942" ], "cpd:C16349": [ "path:map00942" ], - "cpd:C08620": [ + "cpd:C16304": [ "path:map00942" ], "cpd:C04759": [ diff --git a/dev/test_data/map/pathway-gene.json b/dev/test_data/map/pathway-gene.json index 067f40f..1bfcedf 100644 --- a/dev/test_data/map/pathway-gene.json +++ b/dev/test_data/map/pathway-gene.json @@ -222,6 +222,7 @@ "ko:K04041", "ko:K05308", "ko:K05774", + "ko:K06150", "ko:K06151", "ko:K06152", "ko:K06859", @@ -3000,7 +3001,8 @@ "ko:K27673", "ko:K27674", "ko:K27848", - "ko:K28556" + "ko:K28556", + "ko:K29134" ], "path:map00363": [ "ko:K05913", @@ -4075,7 +4077,8 @@ "ko:K28208", "ko:K28214", "ko:K28465", - "ko:K28660" + "ko:K28660", + "ko:K29107" ], "path:map00521": [ "ko:K00010", @@ -4889,7 +4892,8 @@ "ko:K28751", "ko:K28801", "ko:K28825", - "ko:K29025" + "ko:K29025", + "ko:K29114" ], "path:map00562": [ "ko:K00010", @@ -5213,7 +5217,8 @@ "ko:K28721", "ko:K28731", "ko:K28732", - "ko:K28733" + "ko:K28733", + "ko:K29133" ], "path:map00571": [ "ko:K08256", @@ -5354,7 +5359,15 @@ "ko:K16818", "ko:K18857", "ko:K18858", - "ko:K22389" + "ko:K22389", + "ko:K29093", + "ko:K29094", + "ko:K29095", + "ko:K29096", + "ko:K29097", + "ko:K29098", + "ko:K29099", + "ko:K29100" ], "path:map00600": [ "ko:K00654", @@ -5620,7 +5633,8 @@ "ko:K28727", "ko:K28728", "ko:K28729", - "ko:K29029" + "ko:K29029", + "ko:K29125" ], "path:map00621": [ "ko:K00462", @@ -5737,7 +5751,10 @@ "ko:K19630", "ko:K20199", "ko:K20200", - "ko:K20218" + "ko:K20218", + "ko:K29040", + "ko:K29041", + "ko:K29042" ], "path:map00624": [ "ko:K00448", @@ -5785,7 +5802,6 @@ "ko:K21105" ], "path:map00625": [ - "ko:K00001", "ko:K00114", "ko:K00121", "ko:K00128", @@ -5830,7 +5846,6 @@ "ko:K22363" ], "path:map00626": [ - "ko:K00001", "ko:K00121", "ko:K00152", "ko:K00480", @@ -5899,6 +5914,7 @@ "ko:K10219", "ko:K10221", "ko:K11311", + "ko:K12508", "ko:K14333", "ko:K14338", "ko:K14578", @@ -5923,6 +5939,7 @@ "ko:K16320", "ko:K18248", "ko:K18249", + "ko:K18383", "ko:K18541", "ko:K19709", "ko:K20458", @@ -5953,7 +5970,9 @@ "ko:K25938", "ko:K28519", "ko:K28520", - "ko:K28789" + "ko:K28789", + "ko:K29135", + "ko:K29136" ], "path:map00630": [ "ko:K00015", @@ -6929,7 +6948,9 @@ "ko:K23462", "ko:K23470", "ko:K25520", - "ko:K28637" + "ko:K28637", + "ko:K29134", + "ko:K29136" ], "path:map00750": [ "ko:K00097", @@ -7161,7 +7182,6 @@ "ko:K11381", "ko:K15791", "ko:K16869", - "ko:K18821", "ko:K23734", "ko:K23735", "ko:K23750", @@ -7311,6 +7331,7 @@ "ko:K11157", "ko:K11158", "ko:K11161", + "ko:K11167", "ko:K12664", "ko:K12665", "ko:K13369", @@ -7641,7 +7662,8 @@ "ko:K23810", "ko:K23862", "ko:K23990", - "ko:K28464" + "ko:K28464", + "ko:K29065" ], "path:map00903": [ "ko:K00128", @@ -8313,7 +8335,8 @@ "ko:K26182", "ko:K26183", "ko:K26184", - "ko:K26185" + "ko:K26185", + "ko:K29106" ], "path:map00950": [ "ko:K00274", @@ -8567,7 +8590,6 @@ "ko:K28708" ], "path:map00980": [ - "ko:K00001", "ko:K00078", "ko:K00079", "ko:K00081", @@ -8623,7 +8645,6 @@ "ko:K21013" ], "path:map00982": [ - "ko:K00001", "ko:K00121", "ko:K00129", "ko:K00157", @@ -10802,6 +10823,7 @@ "ko:K02372", "ko:K02377", "ko:K02381", + "ko:K02431", "ko:K02433", "ko:K02434", "ko:K02435", @@ -11120,6 +11142,8 @@ "ko:K03859", "ko:K03860", "ko:K03861", + "ko:K03862", + "ko:K03863", "ko:K03865", "ko:K03877", "ko:K03878", @@ -11445,6 +11469,7 @@ "ko:K06132", "ko:K06133", "ko:K06134", + "ko:K06150", "ko:K06151", "ko:K06152", "ko:K06162", @@ -11944,6 +11969,7 @@ "ko:K11158", "ko:K11160", "ko:K11161", + "ko:K11167", "ko:K11170", "ko:K11175", "ko:K11176", @@ -12119,6 +12145,7 @@ "ko:K12501", "ko:K12502", "ko:K12506", + "ko:K12508", "ko:K12524", "ko:K12525", "ko:K12526", @@ -12621,6 +12648,7 @@ "ko:K15038", "ko:K15039", "ko:K15052", + "ko:K15066", "ko:K15067", "ko:K15088", "ko:K15096", @@ -12898,7 +12926,6 @@ "ko:K16849", "ko:K16850", "ko:K16855", - "ko:K16856", "ko:K16860", "ko:K16869", "ko:K16870", @@ -13232,7 +13259,6 @@ "ko:K18804", "ko:K18818", "ko:K18819", - "ko:K18821", "ko:K18824", "ko:K18825", "ko:K18826", @@ -13706,6 +13732,7 @@ "ko:K21797", "ko:K21798", "ko:K21801", + "ko:K21802", "ko:K21830", "ko:K21832", "ko:K21833", @@ -14181,6 +14208,7 @@ "ko:K25881", "ko:K25901", "ko:K25915", + "ko:K25916", "ko:K25959", "ko:K25960", "ko:K25961", @@ -14270,6 +14298,7 @@ "ko:K27599", "ko:K27600", "ko:K27602", + "ko:K27625", "ko:K27636", "ko:K27675", "ko:K27683", @@ -14322,6 +14351,7 @@ "ko:K28071", "ko:K28072", "ko:K28073", + "ko:K28089", "ko:K28125", "ko:K28126", "ko:K28161", @@ -14426,7 +14456,15 @@ "ko:K28981", "ko:K28982", "ko:K28983", - "ko:K28987" + "ko:K28987", + "ko:K29022", + "ko:K29026", + "ko:K29027", + "ko:K29028", + "ko:K29029", + "ko:K29040", + "ko:K29041", + "ko:K29107" ], "path:map01110": [ "ko:K00001", @@ -18803,7 +18841,6 @@ "ko:K23006" ], "path:map01220": [ - "ko:K00001", "ko:K00002", "ko:K00055", "ko:K00121", @@ -19017,7 +19054,9 @@ "ko:K22677", "ko:K22715", "ko:K22716", - "ko:K22717" + "ko:K22717", + "ko:K29040", + "ko:K29041" ], "path:map01230": [ "ko:K00003", @@ -22378,7 +22417,9 @@ "ko:K02998", "ko:K07590", "ko:K14753", + "ko:K15033", "ko:K16174", + "ko:K16830", "ko:K17401", "ko:K17402", "ko:K17403", @@ -22418,6 +22459,7 @@ "ko:K17438", "ko:K17439", "ko:K17440", + "ko:K17659", "ko:K19032", "ko:K19033", "ko:K19034", @@ -22433,7 +22475,9 @@ "ko:K28346", "ko:K28351", "ko:K28397", - "ko:K28431" + "ko:K28431", + "ko:K29076", + "ko:K29077" ], "path:map03013": [ "ko:K03231", @@ -24687,7 +24731,8 @@ "ko:K22603", "ko:K25414", "ko:K25415", - "ko:K25416" + "ko:K25416", + "ko:K29115" ], "path:map04011": [ "ko:K00006", @@ -30278,6 +30323,53 @@ "ko:K21357", "ko:K25893" ], + "path:map04156": [ + "ko:K03237", + "ko:K03238", + "ko:K03239", + "ko:K03240", + "ko:K03241", + "ko:K03242", + "ko:K03680", + "ko:K03754", + "ko:K04043", + "ko:K04077", + "ko:K04079", + "ko:K04374", + "ko:K04452", + "ko:K04722", + "ko:K06269", + "ko:K07203", + "ko:K07204", + "ko:K07232", + "ko:K08266", + "ko:K08270", + "ko:K08341", + "ko:K08675", + "ko:K08860", + "ko:K09032", + "ko:K09044", + "ko:K09490", + "ko:K10131", + "ko:K10132", + "ko:K11137", + "ko:K14019", + "ko:K14230", + "ko:K16184", + "ko:K16194", + "ko:K16195", + "ko:K16196", + "ko:K17558", + "ko:K19518", + "ko:K20064", + "ko:K20402", + "ko:K20403", + "ko:K22429", + "ko:K22758", + "ko:K22759", + "ko:K23010", + "ko:K29051" + ], "path:map04210": [ "ko:K00922", "ko:K01173", @@ -38275,7 +38367,8 @@ "ko:K17445", "ko:K17446", "ko:K19477", - "ko:K25878" + "ko:K25878", + "ko:K29113" ], "path:map04924": [ "ko:K01283", diff --git a/dev/test_kegg_url.py b/dev/test_kegg_url.py index 8a043a4..5a82be7 100644 --- a/dev/test_kegg_url.py +++ b/dev/test_kegg_url.py @@ -148,14 +148,14 @@ def reset_organism_set(): @pt.mark.disable_mock_organism_set def test_organism_set(mocker, _): text_mock = """ - T06555 psyt Candidatus Prometheoarchaeum syntrophicum Prokaryotes;Archaea;Lokiarchaeota;Prometheoarchaeum - T03835 agw Archaeon GW2011_AR10 Prokaryotes;Archaea;unclassified Archaea - T03843 arg Archaeon GW2011_AR20 Prokaryotes;Archaea;unclassified Archaea + T06555 psyt; Promethearchaeum syntrophicum + T03835 agw; Archaeon GW2011_AR10 + T03843 arg; Archaeon GW2011_AR20 """ response_mock = mocker.MagicMock(status_code=200, text=text_mock) get_mock: mocker.MagicMock = mocker.patch('kegg_pull.kegg_url.rq.get', return_value=response_mock) actual_organism_set = ku.AbstractKEGGurl.organism_set - get_mock.assert_called_once_with(url=f'{ku.BASE_URL}/list/organism', timeout=60) + get_mock.assert_called_once_with(url=f'{ku.BASE_URL}/list/genome', timeout=60) expected_organism_set = {'agw', 'T03835', 'T06555', 'T03843', 'psyt', 'arg'} assert actual_organism_set == expected_organism_set get_mock.reset_mock() @@ -168,7 +168,7 @@ def test_organism_set(mocker, _): @pt.mark.disable_mock_organism_set def test_organism_set_unsuccessful(mocker, timeout: bool, _): get_function_patch_path = 'kegg_pull.kegg_url.rq.get' - url = f'{ku.BASE_URL}/list/organism' + url = f'{ku.BASE_URL}/list/genome' error_message = 'The request to the KEGG web API {} while fetching the organism set using the URL: {}' if timeout: get_mock: mocker.MagicMock = mocker.patch(get_function_patch_path, side_effect=rq.exceptions.Timeout()) diff --git a/src/kegg_pull/kegg_url.py b/src/kegg_pull/kegg_url.py index 44e1fec..9250848 100644 --- a/src/kegg_pull/kegg_url.py +++ b/src/kegg_pull/kegg_url.py @@ -49,7 +49,7 @@ def organism_set() -> set[str]: :raises RuntimeError: Raised in the unlikely case that the request fails. """ if AbstractKEGGurl._organism_set is None: - url = f'{BASE_URL}/list/organism' + url = f'{BASE_URL}/list/genome' error_message = 'The request to the KEGG web API {} while fetching the organism set using the URL: {}' try: response = rq.get(url=url, timeout=60) @@ -61,7 +61,8 @@ def organism_set() -> set[str]: organism_list = response.text.strip().split('\n') AbstractKEGGurl._organism_set = set[str]() for organism in organism_list: - [code, name, _, _] = organism.strip().split('\t') + [code, name] = organism.strip().split('\t') + name, _ = name.split(';') AbstractKEGGurl._organism_set.add(code) AbstractKEGGurl._organism_set.add(name) return AbstractKEGGurl._organism_set