From cec0760396d3caf8b4deed5c8d5e73989c74746b Mon Sep 17 00:00:00 2001 From: erikhuck Date: Tue, 9 Jun 2026 15:05:32 -0400 Subject: [PATCH] Updates test data --- dev/test_data/all-brite-entry-ids.txt | 2 +- dev/test_data/drug-entry-ids.txt | 830 +- dev/test_data/glycan-pubchem-conv.txt | 18 +- .../map/compound-reaction-pathway.json | 43456 ++++++++-------- dev/test_data/map/pathway-gene.json | 327 +- dev/test_data/module-entry-ids.txt | 4 +- dev/test_data/module-pathway-link.txt | 9 + 7 files changed, 22475 insertions(+), 22171 deletions(-) diff --git a/dev/test_data/all-brite-entry-ids.txt b/dev/test_data/all-brite-entry-ids.txt index d069f9c..098d9fb 100644 --- a/dev/test_data/all-brite-entry-ids.txt +++ b/dev/test_data/all-brite-entry-ids.txt @@ -150,7 +150,7 @@ br:br08416 br:br08442 br:br08441 br:br08431 -br:br08622 br:br08606 br:br08608 +br:br08622 br:br08623 \ No newline at end of file diff --git a/dev/test_data/drug-entry-ids.txt b/dev/test_data/drug-entry-ids.txt index 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+D13123 +D13257 +D13275 +D13278 +D13312 \ No newline at end of file diff --git a/dev/test_data/glycan-pubchem-conv.txt b/dev/test_data/glycan-pubchem-conv.txt index db9d9a4..b6d5ee9 100644 --- a/dev/test_data/glycan-pubchem-conv.txt +++ b/dev/test_data/glycan-pubchem-conv.txt @@ -7254,7 +7254,6 @@ pubchem:124497893 gl:G08307 pubchem:124497894 gl:G08308 pubchem:124497895 gl:G08309 pubchem:124497896 gl:G08310 -pubchem:124497897 gl:G08311 pubchem:124497898 gl:G08312 pubchem:124497899 gl:G08315 pubchem:124497900 gl:G08316 @@ -10890,6 +10889,7 @@ pubchem:124501559 gl:G13001 pubchem:124501560 gl:G13002 pubchem:124501561 gl:G13003 pubchem:124501562 gl:G13004 +pubchem:433774557 gl:G13006 pubchem:124501563 gl:G13007 pubchem:124501564 gl:G13008 pubchem:497621358 gl:G13009 @@ -11004,7 +11004,12 @@ pubchem:497621364 gl:G13138 pubchem:405226696 gl:G13139 pubchem:497621365 gl:G13140 pubchem:405226697 gl:G13141 +pubchem:433774558 gl:G13142 pubchem:405226698 gl:G13143 +pubchem:433774559 gl:G13144 +pubchem:433774560 gl:G13145 +pubchem:433774561 gl:G13146 +pubchem:433774562 gl:G13147 pubchem:497621366 gl:G13148 pubchem:497621367 gl:G13149 pubchem:497621368 gl:G13150 @@ -11230,9 +11235,20 @@ pubchem:522705678 gl:G13369 pubchem:523265746 gl:G13370 pubchem:522705679 gl:G13371 pubchem:522705680 gl:G13372 +pubchem:528318790 gl:G13373 pubchem:520621169 gl:G13374 pubchem:523265747 gl:G13375 pubchem:523033195 gl:G13376 pubchem:523033196 gl:G13377 pubchem:523265748 gl:G13383 pubchem:523265749 gl:G13384 +pubchem:527701194 gl:G13385 +pubchem:528318791 gl:G13386 +pubchem:527701195 gl:G13387 +pubchem:527701196 gl:G13388 +pubchem:527701197 gl:G13389 +pubchem:528318792 gl:G13390 +pubchem:527701198 gl:G13391 +pubchem:528318793 gl:G13392 +pubchem:528318794 gl:G13393 +pubchem:528318795 gl:G13394 diff --git a/dev/test_data/map/compound-reaction-pathway.json b/dev/test_data/map/compound-reaction-pathway.json index 32365b7..cdb23ba 100644 --- a/dev/test_data/map/compound-reaction-pathway.json +++ b/dev/test_data/map/compound-reaction-pathway.json @@ -1,259 +1,91 @@ { - "cpd:C06042": [ - "path:map00561", - "path:map01100" - ], - "cpd:C00022": [ - "path:map00010", - "path:map00020", - "path:map00030", - "path:map00040", - "path:map00051", - "path:map00052", - "path:map00053", - "path:map00130", - "path:map00220", - "path:map00250", - "path:map00260", - "path:map00261", - "path:map00270", - "path:map00280", - "path:map00290", - "path:map00300", - "path:map00310", - "path:map00330", - "path:map00333", - "path:map00340", - "path:map00350", - "path:map00360", - "path:map00362", - "path:map00380", - "path:map00400", - "path:map00405", - "path:map00410", - "path:map00430", - "path:map00440", - "path:map00450", - "path:map00470", - "path:map00521", - "path:map00541", - "path:map00561", - "path:map00566", - "path:map00620", - "path:map00621", - "path:map00622", - "path:map00624", - "path:map00626", - "path:map00630", - "path:map00633", - "path:map00640", - "path:map00650", - "path:map00660", - "path:map00680", - "path:map00710", - "path:map00720", - "path:map00730", - "path:map00750", - "path:map00760", - "path:map00770", - "path:map00785", - "path:map00790", - "path:map00860", - "path:map00900", - "path:map00960", - "path:map00966", - "path:map00983", - "path:map00984", - "path:map00996", - "path:map01053", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01210", - "path:map01220", - "path:map01230", - "path:map01240" - ], - "cpd:C00015": [ - "path:map00040", - "path:map00052", - "path:map00053", - "path:map00130", - "path:map00140", - "path:map00240", - "path:map00310", - "path:map00350", - "path:map00380", - "path:map00402", - "path:map00460", - "path:map00500", - "path:map00510", - "path:map00514", - "path:map00520", - "path:map00524", - "path:map00525", - "path:map00540", - "path:map00541", - "path:map00550", - "path:map00561", - "path:map00565", - "path:map00566", - "path:map00600", - "path:map00830", - "path:map00860", - "path:map00901", - "path:map00902", - "path:map00906", - "path:map00908", - "path:map00940", - "path:map00941", - "path:map00942", - "path:map00943", - "path:map00944", - "path:map00945", - "path:map00960", - "path:map00965", - "path:map00966", - "path:map00980", - "path:map00982", - "path:map00983", - "path:map00999", - "path:map01051", - "path:map01100", - "path:map01110", - "path:map01210", - "path:map01232", - "path:map01240", - "path:map01250" - ], - "cpd:C00006": [ + "cpd:C00009": [ "path:map00010", "path:map00020", "path:map00030", - "path:map00040", "path:map00051", "path:map00052", "path:map00053", "path:map00061", - "path:map00062", "path:map00071", - "path:map00073", "path:map00074", - "path:map00100", - "path:map00120", - "path:map00130", - "path:map00140", "path:map00220", "path:map00230", - "path:map00232", "path:map00240", "path:map00250", - "path:map00253", "path:map00254", "path:map00260", "path:map00261", "path:map00270", - "path:map00290", + "path:map00280", "path:map00300", "path:map00310", + "path:map00311", "path:map00330", "path:map00331", "path:map00332", "path:map00333", - "path:map00350", - "path:map00360", - "path:map00361", + "path:map00340", "path:map00362", - "path:map00363", - "path:map00364", - "path:map00380", "path:map00400", - "path:map00403", - "path:map00404", + "path:map00401", "path:map00410", "path:map00430", "path:map00440", "path:map00450", - "path:map00460", "path:map00470", "path:map00480", + "path:map00500", "path:map00510", "path:map00520", "path:map00521", - "path:map00522", - "path:map00523", "path:map00524", + "path:map00525", + "path:map00540", "path:map00541", "path:map00550", + "path:map00552", "path:map00561", "path:map00562", "path:map00564", "path:map00565", "path:map00566", - "path:map00590", - "path:map00591", - "path:map00592", "path:map00600", "path:map00620", - "path:map00621", - "path:map00622", - "path:map00623", - "path:map00624", - "path:map00626", + "path:map00625", "path:map00627", "path:map00630", - "path:map00633", "path:map00640", - "path:map00643", + "path:map00642", "path:map00650", + "path:map00660", "path:map00670", "path:map00680", "path:map00710", "path:map00720", + "path:map00730", "path:map00740", "path:map00750", "path:map00760", - "path:map00770", "path:map00780", "path:map00790", - "path:map00830", + "path:map00791", "path:map00860", "path:map00900", - "path:map00901", "path:map00902", "path:map00903", - "path:map00904", - "path:map00905", "path:map00907", "path:map00908", - "path:map00909", "path:map00910", "path:map00920", - "path:map00930", - "path:map00940", - "path:map00941", - "path:map00943", - "path:map00946", - "path:map00950", - "path:map00960", - "path:map00965", - "path:map00966", + "path:map00970", "path:map00975", - "path:map00980", "path:map00981", - "path:map00982", "path:map00983", - "path:map00984", - "path:map00996", "path:map00997", "path:map00998", "path:map00999", - "path:map01040", - "path:map01055", - "path:map01056", - "path:map01057", - "path:map01059", + "path:map01051", "path:map01100", "path:map01110", "path:map01120", @@ -268,33 +100,56 @@ "path:map01310", "path:map01320" ], - "cpd:C00040": [ - "path:map00062", - "path:map00100", - "path:map00311", - "path:map00561", - "path:map00564", - "path:map00565", - "path:map00571", - "path:map00600", - "path:map00830", + "cpd:C01094": [ + "path:map00051", + "path:map00400", "path:map01100", - "path:map01110" + "path:map01120" ], - "cpd:C00162": [ - "path:map00071", - "path:map00100", + "cpd:C00197": [ + "path:map00010", + "path:map00030", + "path:map00051", + "path:map00260", + "path:map00270", + "path:map00440", + "path:map00500", "path:map00561", - "path:map00564", - "path:map00600", - "path:map00830", + "path:map00630", + "path:map00680", + "path:map00710", "path:map01100", - "path:map01110" + "path:map01110", + "path:map01120", + "path:map01200", + "path:map01230" ], - "cpd:C06364": [ - "path:map00552", - "path:map00561", - "path:map01100" + "cpd:C20835": [ + "path:map00051" + ], + "cpd:C01222": [ + "path:map00051", + "path:map00541", + "path:map01100", + "path:map01250" + ], + "cpd:C00354": [ + "path:map00010", + "path:map00030", + "path:map00051", + "path:map00400", + "path:map00680", + "path:map00710", + "path:map01100", + "path:map01110", + "path:map01120", + "path:map01200", + "path:map01230" + ], + "cpd:C01487": [ + "path:map00051", + "path:map01100", + "path:map01120" ], "cpd:C00002": [ "path:map00010", @@ -421,168 +276,42 @@ "path:map01310", "path:map01320" ], - "cpd:C00184": [ - "path:map00130", - "path:map00561", - "path:map00680", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01240" - ], - "cpd:C00258": [ - "path:map00030", - "path:map00051", - "path:map00260", - "path:map00561", - "path:map00630", - "path:map00680", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200" - ], - "cpd:C00422": [ - "path:map00561", - "path:map01100", - "path:map01110" - ], - "cpd:C11521": [ - "path:map00520", - "path:map00561", - "path:map00566", - "path:map01100", - "path:map01110", - "path:map01250" - ], - "cpd:C00074": [ + "cpd:C00044": [ "path:map00010", "path:map00020", - "path:map00400", - "path:map00440", + "path:map00051", + "path:map00230", + "path:map00240", + "path:map00250", + "path:map00310", + "path:map00500", "path:map00520", + "path:map00525", "path:map00541", - "path:map00550", - "path:map00561", "path:map00620", + "path:map00640", "path:map00680", - "path:map00710", - "path:map00720", - "path:map00998", - "path:map01051", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01230", - "path:map01240", - "path:map01250" - ], - "cpd:C00052": [ - "path:map00052", - "path:map00310", - "path:map00514", - "path:map00520", - "path:map00552", - "path:map00561", - "path:map00565", - "path:map00600", - "path:map00944", - "path:map00999", - "path:map01100", - "path:map01110", - "path:map01250" - ], - "cpd:C06041": [ - "path:map00552", - "path:map00561", - "path:map01100" - ], - "cpd:C20898": [ - "path:map00561", - "path:map01100" - ], - "cpd:C00055": [ - "path:map00240", - "path:map00260", - "path:map00440", - "path:map00540", - "path:map00552", - "path:map00561", - "path:map00562", - "path:map00564", - "path:map00565", - "path:map00600", + "path:map00740", "path:map00770", - "path:map00900", - "path:map00998", - "path:map01100", - "path:map01110", - "path:map01232", - "path:map01240" - ], - "cpd:C00416": [ - "path:map00561", - "path:map00563", - "path:map00564", - "path:map01100", - "path:map01110" - ], - "cpd:C00093": [ - "path:map00561", - "path:map00564", - "path:map01100", - "path:map01110" - ], - "cpd:C00197": [ - "path:map00010", - "path:map00030", - "path:map00051", - "path:map00260", - "path:map00270", - "path:map00440", - "path:map00500", - "path:map00561", - "path:map00630", - "path:map00680", - "path:map00710", + "path:map00790", + "path:map00860", "path:map01100", "path:map01110", "path:map01120", "path:map01200", - "path:map01230" - ], - "cpd:C00075": [ - "path:map00040", - "path:map00052", - "path:map00053", - "path:map00240", - "path:map00500", - "path:map00520", - "path:map00541", - "path:map00561", - "path:map00566", - "path:map01100", - "path:map01110", - "path:map01120", "path:map01232", "path:map01240", "path:map01250" ], - "cpd:C00005": [ - "path:map00010", - "path:map00020", + "cpd:C00007": [ "path:map00030", "path:map00040", "path:map00051", "path:map00052", "path:map00053", "path:map00061", - "path:map00062", "path:map00071", "path:map00073", - "path:map00074", "path:map00100", "path:map00120", "path:map00130", @@ -597,39 +326,39 @@ "path:map00260", "path:map00261", "path:map00270", - "path:map00290", - "path:map00300", + "path:map00280", "path:map00310", + "path:map00311", "path:map00330", "path:map00331", "path:map00332", - "path:map00333", + "path:map00340", "path:map00350", "path:map00360", "path:map00361", "path:map00362", "path:map00363", "path:map00364", + "path:map00365", "path:map00380", "path:map00400", + "path:map00401", + "path:map00402", "path:map00403", "path:map00404", + "path:map00405", "path:map00410", "path:map00430", "path:map00440", - "path:map00450", "path:map00460", "path:map00470", "path:map00480", - "path:map00510", - "path:map00520", - "path:map00521", "path:map00522", "path:map00523", "path:map00524", + "path:map00525", + "path:map00540", "path:map00541", - "path:map00550", - "path:map00561", "path:map00562", "path:map00564", "path:map00565", @@ -643,23 +372,26 @@ "path:map00622", "path:map00623", "path:map00624", + "path:map00625", "path:map00626", "path:map00627", "path:map00630", "path:map00633", "path:map00640", + "path:map00642", "path:map00643", "path:map00650", + "path:map00660", "path:map00670", "path:map00680", - "path:map00710", - "path:map00720", + "path:map00730", "path:map00740", "path:map00750", "path:map00760", "path:map00770", "path:map00780", "path:map00790", + "path:map00791", "path:map00830", "path:map00860", "path:map00900", @@ -668,6 +400,7 @@ "path:map00903", "path:map00904", "path:map00905", + "path:map00906", "path:map00907", "path:map00908", "path:map00909", @@ -677,7 +410,8 @@ "path:map00940", "path:map00941", "path:map00943", - "path:map00946", + "path:map00944", + "path:map00945", "path:map00950", "path:map00960", "path:map00965", @@ -694,7 +428,6 @@ "path:map00999", "path:map01040", "path:map01055", - "path:map01056", "path:map01057", "path:map01059", "path:map01100", @@ -711,41 +444,48 @@ "path:map01310", "path:map01320" ], - "cpd:C00103": [ - "path:map00010", - "path:map00040", - "path:map00052", - "path:map00500", + "cpd:C00096": [ + "path:map00051", + "path:map00053", + "path:map00510", "path:map00520", - "path:map00521", - "path:map00523", - "path:map00525", "path:map00541", - "path:map00561", - "path:map00566", - "path:map00740", + "path:map00571", "path:map01100", "path:map01110", - "path:map01120", "path:map01240", "path:map01250" ], - "cpd:C03692": [ - "path:map00561", - "path:map01100" - ], - "cpd:C02457": [ - "path:map00561" + "cpd:C00275": [ + "path:map00051", + "path:map00520", + "path:map00541", + "path:map01100", + "path:map01110", + "path:map01240", + "path:map01250" ], - "cpd:C00865": [ + "cpd:C00577": [ + "path:map00030", + "path:map00051", + "path:map00052", + "path:map00400", "path:map00561", "path:map01100", - "path:map01110" + "path:map01110", + "path:map01120", + "path:map01200" ], - "cpd:C04872": [ - "path:map00561" + "cpd:C00392": [ + "path:map00051", + "path:map01100", + "path:map07054" ], - "cpd:C00004": [ + "cpd:C05144": [ + "path:map00051", + "path:map01100" + ], + "cpd:C00080": [ "path:map00010", "path:map00020", "path:map00030", @@ -767,6 +507,7 @@ "path:map00232", "path:map00240", "path:map00250", + "path:map00253", "path:map00254", "path:map00260", "path:map00261", @@ -776,6 +517,8 @@ "path:map00300", "path:map00310", "path:map00330", + "path:map00331", + "path:map00332", "path:map00333", "path:map00340", "path:map00350", @@ -788,15 +531,20 @@ "path:map00380", "path:map00400", "path:map00401", + "path:map00403", "path:map00404", "path:map00405", "path:map00410", "path:map00430", "path:map00440", + "path:map00450", + "path:map00460", "path:map00470", + "path:map00480", "path:map00510", "path:map00520", "path:map00521", + "path:map00522", "path:map00523", "path:map00524", "path:map00525", @@ -805,10 +553,12 @@ "path:map00561", "path:map00562", "path:map00564", + "path:map00565", "path:map00566", "path:map00590", "path:map00591", "path:map00592", + "path:map00600", "path:map00620", "path:map00621", "path:map00622", @@ -828,10 +578,12 @@ "path:map00680", "path:map00710", "path:map00720", + "path:map00730", "path:map00740", "path:map00750", "path:map00760", "path:map00770", + "path:map00780", "path:map00785", "path:map00790", "path:map00830", @@ -844,14 +596,18 @@ "path:map00905", "path:map00906", "path:map00907", + "path:map00908", "path:map00909", "path:map00910", "path:map00920", "path:map00930", "path:map00940", + "path:map00941", + "path:map00943", "path:map00946", "path:map00950", "path:map00960", + "path:map00965", "path:map00966", "path:map00975", "path:map00980", @@ -860,12 +616,16 @@ "path:map00983", "path:map00984", "path:map00996", + "path:map00997", "path:map00998", "path:map00999", "path:map01040", "path:map01051", "path:map01053", + "path:map01055", + "path:map01056", "path:map01057", + "path:map01059", "path:map01100", "path:map01110", "path:map01120", @@ -880,173 +640,154 @@ "path:map01310", "path:map01320" ], - "cpd:C00681": [ - "path:map00561", - "path:map00564", - "path:map01100", - "path:map01110" - ], - "cpd:C00229": [ - "path:map00061", - "path:map00071", - "path:map00074", - "path:map00254", - "path:map00270", - "path:map00333", - "path:map00524", - "path:map00540", - "path:map00561", - "path:map00564", - "path:map00770", - "path:map00780", - "path:map00785", - "path:map00997", - "path:map00998", - "path:map01056", - "path:map01057", - "path:map01059", - "path:map01100", - "path:map01110", - "path:map01212", - "path:map01240" - ], - "cpd:C00173": [ - "path:map00061", - "path:map00270", - "path:map00561", - "path:map00564", - "path:map01100" - ], - "cpd:C06037": [ - "path:map00561", - "path:map01100" - ], - "cpd:C00605": [ - "path:map00062", - "path:map00561", + "cpd:C00247": [ + "path:map00051", "path:map01100" ], - "cpd:C02133": [ - "path:map00561", - "path:map00564", + "cpd:C00861": [ + "path:map00051", "path:map01100", - "path:map01110" + "path:map01120" ], - "cpd:C00094": [ - "path:map00270", - "path:map00362", - "path:map00430", - "path:map00480", - "path:map00520", - "path:map00561", - "path:map00566", - "path:map00623", - "path:map00626", - "path:map00680", - "path:map00920", - "path:map01100", - "path:map01110", - "path:map01120", - "path:map01230", - "path:map01240", - "path:map01250", - "path:map01320" + "cpd:C02888": [ + "path:map00051", + "path:map01100" ], - "cpd:C00028": [ + "cpd:C00008": [ + "path:map00010", + "path:map00020", "path:map00030", + "path:map00040", + "path:map00051", + "path:map00052", "path:map00053", + "path:map00061", "path:map00071", - "path:map00100", - "path:map00120", - "path:map00130", - "path:map00140", + "path:map00074", + "path:map00220", + "path:map00230", "path:map00240", + "path:map00250", + "path:map00254", "path:map00260", + "path:map00261", + "path:map00270", "path:map00280", + "path:map00300", + "path:map00310", "path:map00330", "path:map00332", + "path:map00333", "path:map00340", - "path:map00360", "path:map00362", - "path:map00365", - "path:map00404", - "path:map00440", + "path:map00400", + "path:map00410", + "path:map00430", "path:map00450", - "path:map00460", "path:map00470", - "path:map00523", + "path:map00480", + "path:map00500", + "path:map00520", + "path:map00521", "path:map00524", + "path:map00525", + "path:map00540", + "path:map00541", + "path:map00550", + "path:map00552", "path:map00561", + "path:map00562", "path:map00564", - "path:map00590", - "path:map00592", + "path:map00565", + "path:map00566", + "path:map00600", "path:map00620", "path:map00625", "path:map00627", "path:map00630", + "path:map00640", "path:map00642", "path:map00650", + "path:map00660", "path:map00670", "path:map00680", + "path:map00710", + "path:map00720", "path:map00730", + "path:map00740", "path:map00750", "path:map00760", "path:map00770", + "path:map00780", "path:map00790", - "path:map00830", + "path:map00791", "path:map00860", + "path:map00900", "path:map00901", "path:map00903", - "path:map00905", - "path:map00906", "path:map00907", "path:map00908", "path:map00910", "path:map00920", + "path:map00970", + "path:map00975", "path:map00981", - "path:map00984", - "path:map00997", + "path:map00983", "path:map00998", - "path:map01059", + "path:map01051", "path:map01100", "path:map01110", "path:map01120", "path:map01200", + "path:map01210", + "path:map01212", "path:map01220", + "path:map01230", + "path:map01232", "path:map01240", "path:map01250", "path:map01310", "path:map01320" ], - "cpd:C00631": [ + "cpd:C00424": [ + "path:map00051", + "path:map00620", + "path:map00640", + "path:map01100", + "path:map01120" + ], + "cpd:C00615": [ "path:map00010", "path:map00030", - "path:map00260", - "path:map00561", - "path:map00630", - "path:map00680", + "path:map00051", + "path:map00052", + "path:map00053", + "path:map00500", + "path:map00520", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01230" + "path:map01120" ], - "cpd:C00111": [ + "cpd:C01355": [ + "path:map00051" + ], + "cpd:C00118": [ "path:map00010", "path:map00030", - "path:map00040", "path:map00051", "path:map00052", - "path:map00561", + "path:map00260", + "path:map00331", + "path:map00400", + "path:map00402", + "path:map00403", "path:map00562", - "path:map00564", "path:map00566", - "path:map00630", - "path:map00640", "path:map00680", "path:map00710", - "path:map00760", - "path:map00997", + "path:map00730", + "path:map00750", + "path:map00900", + "path:map00999", "path:map01100", "path:map01110", "path:map01120", @@ -1054,28 +795,131 @@ "path:map01230", "path:map01240" ], - "cpd:C00641": [ - "path:map00100", - "path:map00440", - "path:map00540", - "path:map00552", - "path:map00561", - "path:map00562", - "path:map00563", + "cpd:C02492": [ + "path:map00051", + "path:map01100" + ], + "cpd:C00035": [ + "path:map00010", + "path:map00020", + "path:map00051", + "path:map00230", + "path:map00240", + "path:map00250", + "path:map00310", + "path:map00500", + "path:map00510", + "path:map00520", + "path:map00525", + "path:map00620", + "path:map00640", + "path:map00680", + "path:map00770", + "path:map00860", + "path:map01100", + "path:map01110", + "path:map01120", + "path:map01200", + "path:map01232", + "path:map01240" + ], + "cpd:C00794": [ + "path:map00051", + "path:map00052", + "path:map01100" + ], + "cpd:C01720": [ + "path:map00051", + "path:map01100", + "path:map01120" + ], + "cpd:C00125": [ + "path:map00010", + "path:map00020", + "path:map00040", + "path:map00051", + "path:map00053", + "path:map00260", + "path:map00430", + "path:map00450", + "path:map00620", + "path:map00625", + "path:map00650", + "path:map00680", + "path:map00720", + "path:map00760", + "path:map00910", + "path:map00920", + "path:map01100", + "path:map01110", + "path:map01120", + "path:map01240", + "path:map01310", + "path:map01320" + ], + "cpd:C00016": [ + "path:map00030", + "path:map00051", + "path:map00071", + "path:map00253", + "path:map00280", + "path:map00310", + "path:map00332", + "path:map00333", + "path:map00361", + "path:map00362", + "path:map00380", + "path:map00404", + "path:map00500", + "path:map00524", "path:map00564", - "path:map00566", - "path:map00600", + "path:map00592", + "path:map00620", + "path:map00624", + "path:map00626", + "path:map00643", + "path:map00650", + "path:map00740", + "path:map00906", + "path:map00907", + "path:map00920", + "path:map00930", + "path:map00975", + "path:map01057", + "path:map01059", "path:map01100", - "path:map01110" + "path:map01110", + "path:map01120", + "path:map01200", + "path:map01212", + "path:map01240", + "path:map01320" ], - "cpd:C06038": [ - "path:map00561" + "cpd:C18096": [ + "path:map00051", + "path:map01100", + "path:map01120" ], - "cpd:C20897": [ - "path:map00561", + "cpd:C03979": [ + "path:map00051", + "path:map01100", + "path:map01120" + ], + "cpd:C11544": [ + "path:map00051", "path:map01100" ], - "cpd:C00080": [ + "cpd:C03117": [ + "path:map00051", + "path:map00541", + "path:map01100", + "path:map01250" + ], + "cpd:C11516": [ + "path:map00051", + "path:map01100" + ], + "cpd:C00006": [ "path:map00010", "path:map00020", "path:map00030", @@ -1102,7 +946,6 @@ "path:map00260", "path:map00261", "path:map00270", - "path:map00280", "path:map00290", "path:map00300", "path:map00310", @@ -1110,20 +953,16 @@ "path:map00331", "path:map00332", "path:map00333", - "path:map00340", "path:map00350", "path:map00360", "path:map00361", "path:map00362", "path:map00363", "path:map00364", - "path:map00365", "path:map00380", "path:map00400", - "path:map00401", "path:map00403", "path:map00404", - "path:map00405", "path:map00410", "path:map00430", "path:map00440", @@ -1137,7 +976,6 @@ "path:map00522", "path:map00523", "path:map00524", - "path:map00525", "path:map00541", "path:map00550", "path:map00561", @@ -1154,27 +992,22 @@ "path:map00622", "path:map00623", "path:map00624", - "path:map00625", "path:map00626", "path:map00627", "path:map00630", "path:map00633", "path:map00640", - "path:map00642", "path:map00643", "path:map00650", - "path:map00660", "path:map00670", "path:map00680", "path:map00710", "path:map00720", - "path:map00730", "path:map00740", "path:map00750", "path:map00760", "path:map00770", "path:map00780", - "path:map00785", "path:map00790", "path:map00830", "path:map00860", @@ -1184,7 +1017,6 @@ "path:map00903", "path:map00904", "path:map00905", - "path:map00906", "path:map00907", "path:map00908", "path:map00909", @@ -1210,8 +1042,6 @@ "path:map00998", "path:map00999", "path:map01040", - "path:map01051", - "path:map01053", "path:map01055", "path:map01056", "path:map01057", @@ -1230,295 +1060,216 @@ "path:map01310", "path:map01320" ], - "cpd:C00124": [ - "path:map00052", - "path:map00531", - "path:map00561", - "path:map00600", - "path:map00603", - "path:map00604", - "path:map01100" - ], - "cpd:C00003": [ + "cpd:C00020": [ "path:map00010", - "path:map00020", "path:map00030", - "path:map00040", "path:map00051", - "path:map00052", - "path:map00053", "path:map00061", - "path:map00062", "path:map00071", - "path:map00073", "path:map00074", - "path:map00100", "path:map00120", "path:map00130", - "path:map00140", "path:map00220", "path:map00230", - "path:map00232", - "path:map00240", "path:map00250", - "path:map00254", - "path:map00260", + "path:map00253", "path:map00261", "path:map00270", "path:map00280", - "path:map00290", "path:map00300", - "path:map00310", - "path:map00330", + "path:map00311", + "path:map00331", + "path:map00332", "path:map00333", - "path:map00340", "path:map00350", "path:map00360", - "path:map00361", "path:map00362", - "path:map00363", "path:map00364", "path:map00365", "path:map00380", - "path:map00400", "path:map00401", "path:map00404", "path:map00405", "path:map00410", "path:map00430", "path:map00440", + "path:map00450", + "path:map00460", "path:map00470", - "path:map00510", - "path:map00520", - "path:map00521", - "path:map00523", + "path:map00500", "path:map00524", - "path:map00525", "path:map00541", "path:map00550", - "path:map00561", - "path:map00562", - "path:map00564", - "path:map00566", - "path:map00590", - "path:map00591", + "path:map00552", "path:map00592", "path:map00620", - "path:map00621", - "path:map00622", - "path:map00623", "path:map00624", - "path:map00625", - "path:map00626", "path:map00627", "path:map00630", - "path:map00633", "path:map00640", "path:map00642", - "path:map00643", "path:map00650", "path:map00660", - "path:map00670", "path:map00680", "path:map00710", "path:map00720", "path:map00730", "path:map00740", - "path:map00750", "path:map00760", "path:map00770", + "path:map00780", "path:map00785", "path:map00790", - "path:map00830", "path:map00860", - "path:map00900", - "path:map00901", - "path:map00902", "path:map00903", "path:map00904", - "path:map00905", - "path:map00906", "path:map00907", - "path:map00909", - "path:map00910", + "path:map00908", "path:map00920", "path:map00930", "path:map00940", - "path:map00946", - "path:map00950", "path:map00960", - "path:map00966", + "path:map00970", "path:map00975", - "path:map00980", - "path:map00981", - "path:map00982", "path:map00983", "path:map00984", "path:map00996", + "path:map00997", "path:map00998", - "path:map00999", - "path:map01040", - "path:map01051", "path:map01053", - "path:map01057", + "path:map01059", "path:map01100", "path:map01110", "path:map01120", "path:map01200", - "path:map01210", "path:map01212", "path:map01220", "path:map01230", "path:map01232", "path:map01240", "path:map01250", - "path:map01310", "path:map01320" ], - "cpd:C00128": [ + "cpd:C00636": [ + "path:map00051", + "path:map00053", + "path:map00520", "path:map00541", - "path:map00561", + "path:map01059", "path:map01100", + "path:map01110", + "path:map01240", "path:map01250" ], - "cpd:C00969": [ - "path:map00561" + "cpd:C00507": [ + "path:map00051", + "path:map01100", + "path:map01120" ], - "cpd:C00008": [ + "cpd:C00665": [ + "path:map00051", + "path:map01100" + ], + "cpd:C03267": [ + "path:map00051", + "path:map01100" + ], + "cpd:C02985": [ + "path:map00051", + "path:map00520", + "path:map01100", + "path:map01250" + ], + "cpd:C00258": [ + "path:map00030", + "path:map00051", + "path:map00260", + "path:map00561", + "path:map00630", + "path:map00680", + "path:map01100", + "path:map01110", + "path:map01120", + "path:map01200" + ], + "cpd:C00159": [ + "path:map00051", + "path:map00052", + "path:map00510", + "path:map00513", + "path:map00520", + "path:map01100", + "path:map01250" + ], + "cpd:C04261": [ "path:map00010", - "path:map00020", "path:map00030", - "path:map00040", "path:map00051", "path:map00052", "path:map00053", - "path:map00061", - "path:map00071", - "path:map00074", - "path:map00220", - "path:map00230", - "path:map00240", - "path:map00250", - "path:map00254", - "path:map00260", - "path:map00261", - "path:map00270", - "path:map00280", - "path:map00300", - "path:map00310", - "path:map00330", - "path:map00332", - "path:map00333", - "path:map00340", - "path:map00362", - "path:map00400", - "path:map00410", - "path:map00430", - "path:map00450", - "path:map00470", - "path:map00480", "path:map00500", "path:map00520", - "path:map00521", - "path:map00524", - "path:map00525", - "path:map00540", - "path:map00541", - "path:map00550", - "path:map00552", - "path:map00561", - "path:map00562", - "path:map00564", - "path:map00565", - "path:map00566", - "path:map00600", - "path:map00620", - "path:map00625", - "path:map00627", - "path:map00630", - "path:map00640", - "path:map00642", - "path:map00650", - "path:map00660", - "path:map00670", - "path:map00680", - "path:map00710", - "path:map00720", - "path:map00730", - "path:map00740", - "path:map00750", - "path:map00760", - "path:map00770", - "path:map00780", - "path:map00790", - "path:map00791", - "path:map00860", - "path:map00900", - "path:map00901", - "path:map00903", - "path:map00907", - "path:map00908", - "path:map00910", - "path:map00920", - "path:map00970", - "path:map00975", - "path:map00981", - "path:map00983", - "path:map00998", - "path:map01051", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200", - "path:map01210", - "path:map01212", - "path:map01220", - "path:map01230", - "path:map01232", - "path:map01240", - "path:map01250", - "path:map01310", - "path:map01320" + "path:map01120" ], - "cpd:C00344": [ - "path:map00552", - "path:map00561", - "path:map00564", + "cpd:C00644": [ + "path:map00051", "path:map01100" ], - "cpd:C05401": [ - "path:map00052", - "path:map00561" + "cpd:C01721": [ + "path:map00051", + "path:map01100", + "path:map01120" ], - "cpd:C04046": [ - "path:map00552", - "path:map00561", - "path:map01100" + "cpd:C02431": [ + "path:map00051", + "path:map01100", + "path:map01120" ], - "cpd:C06365": [ - "path:map00561", + "cpd:C01096": [ + "path:map00051", "path:map01100" ], - "cpd:C00577": [ - "path:map00030", + "cpd:C02962": [ "path:map00051", - "path:map00052", - "path:map00400", - "path:map00561", "path:map01100", - "path:map01110", - "path:map01120", - "path:map01200" + "path:map01120" ], - "cpd:C00116": [ - "path:map00040", - "path:map00052", - "path:map00561", - "path:map00564", + "cpd:C00186": [ + "path:map00010", + "path:map00051", + "path:map00620", + "path:map00640", + "path:map00643", "path:map01100", "path:map01110", - "path:map01120", - "path:map07054" + "path:map01120" + ], + "cpd:C02977": [ + "path:map00051", + "path:map00541", + "path:map01100", + "path:map01250" + ], + "cpd:C20836": [ + "path:map00051", + "path:map01100", + "path:map01120" + ], + "cpd:C00976": [ + "path:map00051", + "path:map00520", + "path:map01100", + "path:map01250" + ], + "cpd:C00464": [ + "path:map00051", + "path:map01100" + ], + "cpd:C01099": [ + "path:map00051", + "path:map01100", + "path:map01120" ], "cpd:C00001": [ "path:map00010", @@ -1688,17 +1439,85 @@ "path:map01310", "path:map01320" ], - "cpd:C06040": [ - "path:map00552", - "path:map00561", - "path:map01100" - ], - "cpd:C04315": [ - "path:map00561" + "cpd:C00027": [ + "path:map00030", + "path:map00040", + "path:map00051", + "path:map00052", + "path:map00053", + "path:map00230", + "path:map00232", + "path:map00250", + "path:map00260", + "path:map00261", + "path:map00270", + "path:map00280", + "path:map00310", + "path:map00311", + "path:map00330", + "path:map00340", + "path:map00350", + "path:map00360", + "path:map00362", + "path:map00365", + "path:map00380", + "path:map00400", + "path:map00404", + "path:map00405", + "path:map00410", + "path:map00440", + "path:map00470", + "path:map00480", + "path:map00524", + "path:map00564", + "path:map00620", + "path:map00626", + "path:map00627", + "path:map00630", + "path:map00640", + "path:map00660", + "path:map00670", + "path:map00680", + "path:map00730", + "path:map00750", + "path:map00760", + "path:map00770", + "path:map00830", + "path:map00860", + "path:map00900", + "path:map00901", + "path:map00906", + "path:map00910", + "path:map00920", + "path:map00930", + "path:map00950", + "path:map00960", + "path:map00981", + "path:map00982", + "path:map00983", + "path:map00984", + "path:map00997", + "path:map00998", + "path:map00999", + "path:map01040", + "path:map01055", + "path:map01057", + "path:map01100", + "path:map01110", + "path:map01120", + "path:map01200", + "path:map01212", + "path:map01232", + "path:map01240" ], - "cpd:C00010": [ + "cpd:C00003": [ "path:map00010", "path:map00020", + "path:map00030", + "path:map00040", + "path:map00051", + "path:map00052", + "path:map00053", "path:map00061", "path:map00062", "path:map00071", @@ -1707,9 +1526,12 @@ "path:map00100", "path:map00120", "path:map00130", + "path:map00140", "path:map00220", + "path:map00230", + "path:map00232", + "path:map00240", "path:map00250", - "path:map00253", "path:map00254", "path:map00260", "path:map00261", @@ -1718,38 +1540,40 @@ "path:map00290", "path:map00300", "path:map00310", - "path:map00311", "path:map00330", - "path:map00332", "path:map00333", "path:map00340", "path:map00350", "path:map00360", + "path:map00361", "path:map00362", + "path:map00363", "path:map00364", "path:map00365", "path:map00380", "path:map00400", + "path:map00401", + "path:map00404", "path:map00405", "path:map00410", "path:map00430", "path:map00440", "path:map00470", - "path:map00480", + "path:map00510", "path:map00520", - "path:map00522", + "path:map00521", "path:map00523", - "path:map00531", + "path:map00524", + "path:map00525", "path:map00541", + "path:map00550", "path:map00561", "path:map00562", - "path:map00563", "path:map00564", - "path:map00565", "path:map00566", - "path:map00571", + "path:map00590", + "path:map00591", "path:map00592", - "path:map00600", "path:map00620", "path:map00621", "path:map00622", @@ -1762,43 +1586,52 @@ "path:map00633", "path:map00640", "path:map00642", + "path:map00643", "path:map00650", "path:map00660", + "path:map00670", "path:map00680", + "path:map00710", "path:map00720", + "path:map00730", + "path:map00740", + "path:map00750", + "path:map00760", "path:map00770", - "path:map00780", "path:map00785", + "path:map00790", "path:map00830", "path:map00860", "path:map00900", "path:map00901", + "path:map00902", "path:map00903", "path:map00904", + "path:map00905", + "path:map00906", "path:map00907", + "path:map00909", + "path:map00910", "path:map00920", "path:map00930", "path:map00940", - "path:map00941", - "path:map00942", - "path:map00943", - "path:map00944", - "path:map00945", + "path:map00946", "path:map00950", "path:map00960", "path:map00966", "path:map00975", + "path:map00980", + "path:map00981", + "path:map00982", "path:map00983", "path:map00984", "path:map00996", - "path:map00997", "path:map00998", "path:map00999", "path:map01040", "path:map01051", - "path:map01055", - "path:map01056", - "path:map01059", + "path:map01053", + "path:map01057", "path:map01100", "path:map01110", "path:map01120", @@ -1807,15 +1640,14 @@ "path:map01212", "path:map01220", "path:map01230", + "path:map01232", "path:map01240", "path:map01250", + "path:map01310", "path:map01320" ], - "cpd:C01885": [ - "path:map00100", - "path:map00561", - "path:map01100", - "path:map01110" + "cpd:C06192": [ + "path:map00051" ], "cpd:C00013": [ "path:map00010", @@ -1932,18 +1764,50 @@ "path:map01250", "path:map01320" ], - "cpd:C00009": [ + "cpd:C00126": [ + "path:map00010", + "path:map00020", + "path:map00040", + "path:map00051", + "path:map00053", + "path:map00260", + "path:map00430", + "path:map00450", + "path:map00620", + "path:map00625", + "path:map00650", + "path:map00680", + "path:map00720", + "path:map00760", + "path:map00910", + "path:map00920", + "path:map01100", + "path:map01110", + "path:map01120", + "path:map01240", + "path:map01310", + "path:map01320" + ], + "cpd:C00004": [ "path:map00010", "path:map00020", "path:map00030", + "path:map00040", "path:map00051", "path:map00052", "path:map00053", "path:map00061", + "path:map00062", "path:map00071", + "path:map00073", "path:map00074", + "path:map00100", + "path:map00120", + "path:map00130", + "path:map00140", "path:map00220", "path:map00230", + "path:map00232", "path:map00240", "path:map00250", "path:map00254", @@ -1951,74 +1815,100 @@ "path:map00261", "path:map00270", "path:map00280", + "path:map00290", "path:map00300", "path:map00310", - "path:map00311", "path:map00330", - "path:map00331", - "path:map00332", "path:map00333", "path:map00340", + "path:map00350", + "path:map00360", + "path:map00361", "path:map00362", + "path:map00363", + "path:map00364", + "path:map00365", + "path:map00380", "path:map00400", "path:map00401", + "path:map00404", + "path:map00405", "path:map00410", "path:map00430", "path:map00440", - "path:map00450", "path:map00470", - "path:map00480", - "path:map00500", "path:map00510", "path:map00520", "path:map00521", + "path:map00523", "path:map00524", "path:map00525", - "path:map00540", "path:map00541", "path:map00550", - "path:map00552", "path:map00561", "path:map00562", "path:map00564", - "path:map00565", "path:map00566", - "path:map00600", + "path:map00590", + "path:map00591", + "path:map00592", "path:map00620", + "path:map00621", + "path:map00622", + "path:map00623", + "path:map00624", "path:map00625", + "path:map00626", "path:map00627", "path:map00630", + "path:map00633", "path:map00640", "path:map00642", + "path:map00643", "path:map00650", "path:map00660", "path:map00670", "path:map00680", "path:map00710", "path:map00720", - "path:map00730", "path:map00740", "path:map00750", "path:map00760", - "path:map00780", + "path:map00770", + "path:map00785", "path:map00790", - "path:map00791", + "path:map00830", "path:map00860", "path:map00900", + "path:map00901", "path:map00902", "path:map00903", + "path:map00904", + "path:map00905", + "path:map00906", "path:map00907", - "path:map00908", + "path:map00909", "path:map00910", "path:map00920", - "path:map00970", + "path:map00930", + "path:map00940", + "path:map00946", + "path:map00950", + "path:map00960", + "path:map00966", "path:map00975", + "path:map00980", "path:map00981", + "path:map00982", "path:map00983", - "path:map00997", + "path:map00984", + "path:map00996", "path:map00998", "path:map00999", + "path:map01040", "path:map01051", + "path:map01053", + "path:map01057", "path:map01100", "path:map01110", "path:map01120", @@ -2033,145 +1923,395 @@ "path:map01310", "path:map01320" ], - "cpd:C13508": [ + "cpd:C01934": [ + "path:map00051", + "path:map01100", + "path:map01120" + ], + "cpd:C00111": [ + "path:map00010", + 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--- a/dev/test_data/map/pathway-gene.json +++ b/dev/test_data/map/pathway-gene.json @@ -274,7 +274,9 @@ "ko:K26208", "ko:K28747", "ko:K28748", - "ko:K28849" + "ko:K28849", + "ko:K28886", + "ko:K28887" ], "path:map00040": [ "ko:K00002", @@ -372,7 +374,8 @@ "ko:K28606", "ko:K28660", "ko:K28749", - "ko:K28750" + "ko:K28750", + "ko:K28954" ], "path:map00051": [ "ko:K00007", @@ -418,6 +421,7 @@ "ko:K01820", "ko:K01840", "ko:K02377", + "ko:K02431", "ko:K02446", "ko:K02768", "ko:K02769", @@ -495,7 +499,9 @@ "ko:K28472", "ko:K28607", "ko:K28751", - "ko:K28849" + "ko:K28849", + "ko:K29027", + "ko:K29028" ], "path:map00052": [ "ko:K00011", @@ -578,7 +584,11 @@ "ko:K22215", "ko:K25026", "ko:K28214", - "ko:K28660" + "ko:K28660", + "ko:K28886", + "ko:K28887", + "ko:K28892", + "ko:K28898" ], "path:map00053": [ "ko:K00002", @@ -1528,6 +1538,7 @@ "ko:K06952", "ko:K06966", "ko:K07023", + "ko:K07097", "ko:K07127", "ko:K07816", "ko:K08041", @@ -1607,7 +1618,6 @@ "ko:K16841", "ko:K16842", "ko:K16855", - "ko:K16856", "ko:K18151", "ko:K18283", "ko:K18424", @@ -1656,7 +1666,10 @@ "ko:K27625", "ko:K28089", "ko:K28794", - "ko:K28795" + "ko:K28795", + "ko:K28932", + "ko:K28933", + "ko:K29022" ], "path:map00232": [ "ko:K00106", @@ -2102,7 +2115,6 @@ "ko:K01762", "ko:K01767", "ko:K01919", - "ko:K01920", "ko:K03334", "ko:K05396", "ko:K05810", @@ -2177,7 +2189,8 @@ "ko:K25316", "ko:K25317", "ko:K27857", - "ko:K28205" + "ko:K28205", + "ko:K28981" ], "path:map00280": [ "ko:K00020", @@ -2635,6 +2648,7 @@ "ko:K01712", "ko:K01745", "ko:K01814", + "ko:K01919", "ko:K02500", "ko:K02501", "ko:K02502", @@ -2660,7 +2674,8 @@ "ko:K20247", "ko:K22437", "ko:K24017", - "ko:K28842" + "ko:K28842", + "ko:K28982" ], "path:map00350": [ "ko:K00001", @@ -3558,7 +3573,8 @@ "ko:K25317", "ko:K25364", "ko:K25365", - "ko:K26272" + "ko:K26272", + "ko:K29026" ], "path:map00480": [ "ko:K00031", @@ -3617,7 +3633,9 @@ "ko:K24136", "ko:K24137", "ko:K24138", - "ko:K25210" + "ko:K25210", + "ko:K28983", + "ko:K29001" ], "path:map00500": [ "ko:K00688", @@ -3726,7 +3744,9 @@ "ko:K22451", "ko:K22934", "ko:K25026", - "ko:K28660" + "ko:K28660", + "ko:K28898", + "ko:K28899" ], "path:map00510": [ "ko:K00717", @@ -4868,7 +4888,8 @@ "ko:K28660", "ko:K28751", "ko:K28801", - "ko:K28825" + "ko:K28825", + "ko:K29025" ], "path:map00562": [ "ko:K00010", @@ -5101,12 +5122,14 @@ "ko:K19007", "ko:K19664", "ko:K19665", + "ko:K21830", "ko:K22389", "ko:K22697", "ko:K22831", "ko:K24872", "ko:K25193", - "ko:K28477" + "ko:K28477", + "ko:K28873" ], "path:map00565": [ "ko:K00803", @@ -5390,7 +5413,8 @@ "ko:K28194", "ko:K28195", "ko:K28560", - "ko:K28561" + "ko:K28561", + "ko:K28874" ], "path:map00601": [ "ko:K00709", @@ -5595,7 +5619,8 @@ "ko:K28726", "ko:K28727", "ko:K28728", - "ko:K28729" + "ko:K28729", + "ko:K29029" ], "path:map00621": [ "ko:K00462", @@ -6360,6 +6385,7 @@ "ko:K09011", "ko:K10218", "ko:K11258", + "ko:K11390", "ko:K14449", "ko:K14471", "ko:K14472", @@ -6640,7 +6666,8 @@ "ko:K25124", "ko:K25528", "ko:K28205", - "ko:K28715" + "ko:K28715", + "ko:K28979" ], "path:map00710": [ "ko:K00024", @@ -7030,7 +7057,9 @@ "ko:K20454", "ko:K26956", "ko:K27536", - "ko:K28299" + "ko:K28299", + "ko:K28925", + "ko:K28926" ], "path:map00770": [ "ko:K00053", @@ -7056,6 +7085,7 @@ "ko:K01947", "ko:K02201", "ko:K02318", + "ko:K02362", "ko:K03525", "ko:K04765", "ko:K06016", @@ -7077,7 +7107,8 @@ "ko:K18966", "ko:K21977", "ko:K24263", - "ko:K24264" + "ko:K24264", + "ko:K28885" ], "path:map00780": [ "ko:K00059", @@ -7697,7 +7728,9 @@ "ko:K27850", "ko:K28328", "ko:K28367", - "ko:K28368" + "ko:K28368", + "ko:K28987", + "ko:K28988" ], "path:map00905": [ "ko:K09587", @@ -7962,7 +7995,9 @@ "ko:K26139", "ko:K27148", "ko:K28504", - "ko:K28761" + "ko:K28761", + "ko:K28955", + "ko:K28956" ], "path:map00920": [ "ko:K00184", @@ -8155,7 +8190,8 @@ "ko:K18368", "ko:K20039", "ko:K22395", - "ko:K23662" + "ko:K23662", + "ko:K28924" ], "path:map00941": [ "ko:K00475", @@ -10765,6 +10801,7 @@ "ko:K02371", "ko:K02372", "ko:K02377", + "ko:K02381", "ko:K02433", "ko:K02434", "ko:K02435", @@ -11140,6 +11177,7 @@ "ko:K03966", "ko:K03967", "ko:K03968", + "ko:K03972", "ko:K04019", "ko:K04020", "ko:K04021", @@ -11457,6 +11495,7 @@ "ko:K07043", "ko:K07046", "ko:K07072", + "ko:K07097", "ko:K07102", "ko:K07104", "ko:K07106", @@ -11935,6 +11974,7 @@ "ko:K11358", "ko:K11381", "ko:K11389", + "ko:K11390", "ko:K11394", "ko:K11395", "ko:K11410", @@ -13448,6 +13488,7 @@ "ko:K20503", "ko:K20508", "ko:K20509", + "ko:K20514", "ko:K20547", "ko:K20611", "ko:K20616", @@ -13639,6 +13680,7 @@ "ko:K21672", "ko:K21680", "ko:K21681", + "ko:K21682", "ko:K21692", "ko:K21693", "ko:K21721", @@ -13664,6 +13706,7 @@ "ko:K21797", "ko:K21798", "ko:K21801", + "ko:K21830", "ko:K21832", "ko:K21833", "ko:K21834", @@ -13957,6 +14000,7 @@ "ko:K23790", "ko:K23825", "ko:K23862", + "ko:K23885", "ko:K23975", "ko:K23976", "ko:K23977", @@ -14353,7 +14397,36 @@ "ko:K28747", "ko:K28748", "ko:K28749", - "ko:K28750" + "ko:K28750", + "ko:K28781", + "ko:K28794", + "ko:K28795", + "ko:K28801", + "ko:K28825", + "ko:K28842", + "ko:K28849", + "ko:K28853", + "ko:K28854", + "ko:K28865", + "ko:K28874", + "ko:K28885", + "ko:K28886", + "ko:K28887", + "ko:K28892", + "ko:K28898", + "ko:K28899", + "ko:K28925", + "ko:K28926", + "ko:K28932", + "ko:K28933", + "ko:K28954", + "ko:K28955", + "ko:K28956", + "ko:K28979", + "ko:K28981", + "ko:K28982", + "ko:K28983", + "ko:K28987" ], "path:map01110": [ "ko:K00001", @@ -14817,6 +14890,7 @@ "ko:K01914", "ko:K01915", "ko:K01918", + "ko:K01919", "ko:K01923", "ko:K01933", "ko:K01940", @@ -15012,6 +15086,7 @@ "ko:K06928", "ko:K06981", "ko:K06998", + "ko:K07008", "ko:K07024", "ko:K07029", "ko:K07094", @@ -15946,6 +16021,9 @@ "ko:K18859", "ko:K18860", "ko:K18884", + "ko:K18911", + "ko:K18912", + "ko:K18913", "ko:K18933", "ko:K18966", "ko:K19007", @@ -16044,6 +16122,8 @@ "ko:K20156", "ko:K20159", "ko:K20204", + "ko:K20246", + "ko:K20247", "ko:K20257", "ko:K20260", "ko:K20261", @@ -16483,6 +16563,7 @@ "ko:K24110", "ko:K24111", "ko:K24112", + "ko:K24182", "ko:K24189", "ko:K24263", "ko:K24264", @@ -16662,7 +16743,18 @@ "ko:K28706", "ko:K28707", "ko:K28708", - "ko:K28751" + "ko:K28751", + "ko:K28799", + "ko:K28801", + "ko:K28825", + "ko:K28842", + "ko:K28849", + "ko:K28898", + "ko:K28899", + "ko:K28924", + "ko:K28982", + "ko:K28987", + "ko:K28988" ], "path:map01120": [ "ko:K00001", @@ -16840,6 +16932,7 @@ "ko:K00492", "ko:K00529", "ko:K00531", + "ko:K00539", "ko:K00577", "ko:K00578", "ko:K00579", @@ -17075,6 +17168,7 @@ "ko:K02303", "ko:K02304", "ko:K02305", + "ko:K02381", "ko:K02439", "ko:K02446", "ko:K02492", @@ -17141,6 +17235,7 @@ "ko:K03895", "ko:K03896", "ko:K03897", + "ko:K03972", "ko:K04021", "ko:K04022", "ko:K04041", @@ -17722,6 +17817,7 @@ "ko:K18107", "ko:K18118", "ko:K18121", + "ko:K18126", "ko:K18127", "ko:K18128", "ko:K18151", @@ -17894,6 +17990,7 @@ "ko:K21673", "ko:K21674", "ko:K21675", + "ko:K21682", "ko:K21683", "ko:K21722", "ko:K21723", @@ -18101,7 +18198,14 @@ "ko:K28728", "ko:K28729", "ko:K28748", - "ko:K28749" + "ko:K28749", + "ko:K28789", + "ko:K28794", + "ko:K28795", + "ko:K28849", + "ko:K28886", + "ko:K28887", + "ko:K28979" ], "path:map01200": [ "ko:K00018", @@ -18457,6 +18561,7 @@ "ko:K19312", "ko:K20455", "ko:K21071", + "ko:K21682", "ko:K22015", "ko:K22305", "ko:K22480", @@ -18465,6 +18570,7 @@ "ko:K22515", "ko:K22516", "ko:K22568", + "ko:K22969", "ko:K23146", "ko:K23304", "ko:K24182", @@ -18486,7 +18592,9 @@ "ko:K28727", "ko:K28728", "ko:K28729", - "ko:K28761" + "ko:K28761", + "ko:K28886", + "ko:K28887" ], "path:map01210": [ "ko:K00030", @@ -19660,7 +19768,9 @@ "ko:K24866", "ko:K25033", "ko:K25570", - "ko:K28034" + "ko:K28034", + "ko:K28925", + "ko:K28926" ], "path:map01250": [ "ko:K00012", @@ -27224,7 +27334,8 @@ "ko:K26169", "ko:K26170", "ko:K26171", - "ko:K27951" + "ko:K27951", + "ko:K28974" ], "path:map04081": [ "ko:K00922", @@ -29240,9 +29351,19 @@ "path:map04145": [ "ko:K00914", "ko:K00921", - "ko:K01330", + "ko:K00922", + "ko:K01077", + "ko:K01319", + "ko:K01327", + "ko:K01350", + "ko:K01363", "ko:K01365", "ko:K01368", + "ko:K01371", + "ko:K01379", + "ko:K01402", + "ko:K01403", + "ko:K01528", "ko:K02144", "ko:K02145", "ko:K02146", @@ -29255,17 +29376,24 @@ "ko:K02153", "ko:K02154", "ko:K02155", + "ko:K02649", "ko:K03661", "ko:K03662", "ko:K03990", "ko:K03991", + "ko:K04011", "ko:K04391", "ko:K04392", + "ko:K04648", "ko:K04659", + "ko:K05031", + "ko:K05230", + "ko:K05398", "ko:K05653", "ko:K05654", "ko:K05692", "ko:K05719", + "ko:K05855", "ko:K06259", "ko:K06461", "ko:K06463", @@ -29275,8 +29403,8 @@ "ko:K06484", "ko:K06487", "ko:K06493", + "ko:K06497", "ko:K06498", - "ko:K06503", "ko:K06513", "ko:K06528", "ko:K06558", @@ -29289,6 +29417,9 @@ "ko:K07342", "ko:K07374", "ko:K07375", + "ko:K07860", + "ko:K07885", + "ko:K07886", "ko:K07887", "ko:K07888", "ko:K07889", @@ -29300,8 +29431,18 @@ "ko:K08012", "ko:K08054", "ko:K08057", + "ko:K08333", + "ko:K08334", + "ko:K08336", + "ko:K08337", + "ko:K08339", + "ko:K08341", + "ko:K08342", + "ko:K08343", "ko:K08488", "ko:K08492", + "ko:K08508", + "ko:K08515", "ko:K08517", "ko:K08763", "ko:K09481", @@ -29311,6 +29452,7 @@ "ko:K10068", "ko:K10074", "ko:K10089", + "ko:K10104", "ko:K10159", "ko:K10160", "ko:K10169", @@ -29318,21 +29460,61 @@ "ko:K10414", "ko:K10415", "ko:K10416", + "ko:K10417", + "ko:K10418", + "ko:K10419", + "ko:K10420", + "ko:K10424", + "ko:K10425", + "ko:K10426", + "ko:K10427", + "ko:K10428", + "ko:K10435", "ko:K10789", "ko:K10956", + "ko:K11140", "ko:K12182", "ko:K12478", "ko:K12560", "ko:K13240", + "ko:K13502", + "ko:K13504", "ko:K13505", "ko:K13813", "ko:K13882", "ko:K13883", "ko:K13884", "ko:K13885", + "ko:K13915", + "ko:K16141", + "ko:K16575", + "ko:K16576", "ko:K16824", "ko:K16857", - "ko:K21421" + "ko:K17283", + "ko:K17890", + "ko:K19330", + "ko:K20131", + "ko:K20174", + "ko:K20179", + "ko:K20180", + "ko:K20181", + "ko:K20182", + "ko:K20183", + "ko:K20184", + "ko:K20195", + "ko:K20868", + "ko:K21129", + "ko:K21156", + "ko:K21249", + "ko:K21421", + "ko:K22644", + "ko:K23484", + "ko:K24665", + "ko:K25374", + "ko:K26936", + "ko:K27045", + "ko:K27566" ], "path:map04146": [ "ko:K00031", @@ -29543,6 +29725,83 @@ "ko:K26935", "ko:K26936" ], + "path:map04149": [ + "ko:K00006", + "ko:K00026", + "ko:K00031", + "ko:K00232", + "ko:K00383", + "ko:K00486", + "ko:K00624", + "ko:K01068", + "ko:K01440", + "ko:K01551", + "ko:K01638", + "ko:K01647", + "ko:K01705", + "ko:K01760", + "ko:K01897", + "ko:K03781", + "ko:K05863", + "ko:K06030", + "ko:K06664", + "ko:K06944", + "ko:K07342", + "ko:K07513", + "ko:K08745", + "ko:K09481", + "ko:K10689", + "ko:K10956", + "ko:K12200", + "ko:K12261", + "ko:K13237", + "ko:K13239", + "ko:K13335", + "ko:K13336", + "ko:K13337", + "ko:K13338", + "ko:K13339", + "ko:K13341", + "ko:K13342", + "ko:K13343", + "ko:K13344", + "ko:K13345", + "ko:K13346", + "ko:K13352", + "ko:K13354", + "ko:K14454", + "ko:K14729", + "ko:K15628", + "ko:K17065", + "ko:K17279", + "ko:K17775", + "ko:K17969", + "ko:K17970", + "ko:K22133", + "ko:K22138", + "ko:K22139", + "ko:K22260", + "ko:K22587", + "ko:K28901", + "ko:K28902", + "ko:K28903", + "ko:K28904", + "ko:K28905", + "ko:K28906", + "ko:K28907", + "ko:K28908", + "ko:K28910", + "ko:K28992", + "ko:K28993", + "ko:K28994", + "ko:K28995", + "ko:K28996", + "ko:K28997", + "ko:K28998", + "ko:K28999", + "ko:K29000", + "ko:K29001" + ], "path:map04150": [ "ko:K00182", "ko:K00312", @@ -31139,7 +31398,8 @@ "ko:K21635", "ko:K23616", "ko:K25100", - "ko:K26480" + "ko:K26480", + "ko:K28984" ], "path:map04340": [ "ko:K00910", @@ -33395,7 +33655,8 @@ "ko:K19822", "ko:K23815", "ko:K23816", - "ko:K23817" + "ko:K23817", + "ko:K29010" ], "path:map04611": [ "ko:K00509", diff --git a/dev/test_data/module-entry-ids.txt b/dev/test_data/module-entry-ids.txt index 08269c2..22853a6 100644 --- a/dev/test_data/module-entry-ids.txt +++ b/dev/test_data/module-entry-ids.txt @@ -1,2 +1,2 @@ -md:M00050 -md:M00959 \ No newline at end of file +M00050 +M00959 \ No newline at end of file diff --git a/dev/test_data/module-pathway-link.txt b/dev/test_data/module-pathway-link.txt index 6102522..15d1db6 100644 --- a/dev/test_data/module-pathway-link.txt +++ b/dev/test_data/module-pathway-link.txt @@ -187,6 +187,9 @@ path:map00333 md:M00838 path:map00333 md:M00837 path:map00340 md:M00026 path:map00340 md:M00045 +path:map00340 md:M01061 +path:map00340 md:M01063 +path:map00340 md:M01062 path:map00350 md:M00043 path:map00350 md:M00042 path:map00350 md:M00044 @@ -1039,6 +1042,7 @@ path:map01100 md:M00998 path:map01100 md:M01016 path:map01100 md:M01041 path:map01100 md:M00977 +path:map01100 md:M01061 path:map01100 md:M01053 path:map01100 md:M01054 path:map01100 md:M01055 @@ -1051,6 +1055,7 @@ path:map01100 md:M01030 path:map01100 md:M01033 path:map01100 md:M01032 path:map01100 md:M01036 +path:map01100 md:M01063 path:map01100 md:M00988 path:map01100 md:M00997 path:map01100 md:M01039 @@ -1068,6 +1073,7 @@ path:map01100 md:M01048 path:map01100 md:M01049 path:map01100 md:M01050 path:map01100 md:M01051 +path:map01100 md:M01062 path:map01100 md:M01034 path:map01100 md:M01035 path:map01100 md:M00983 @@ -1263,17 +1269,20 @@ path:map01110 md:M00946 path:map01110 md:M00989 path:map01110 md:M00965 path:map01110 md:M01041 +path:map01110 md:M01061 path:map01110 md:M01053 path:map01110 md:M01054 path:map01110 md:M01055 path:map01110 md:M01059 path:map01110 md:M00981 +path:map01110 md:M01063 path:map01110 md:M01039 path:map01110 md:M01040 path:map01110 md:M01056 path:map01110 md:M01057 path:map01110 md:M01058 path:map01110 md:M00979 +path:map01110 md:M01062 path:map01110 md:M00978 path:map01110 md:M01060 path:map01110 md:M01044