From f7b29402873c149480a14b18606aa8f32b4ed5af Mon Sep 17 00:00:00 2001 From: hosseinvk Date: Mon, 10 Aug 2026 22:51:25 +1000 Subject: [PATCH] Disable multienrichjam install code on setup page too Comments out install.packages("remotes")/remotes::install_github(...) in the setup page's install-multienrichjam chunk, matching the same fix already applied to the equivalent chunk in 10-clusterprofiler.Rmd. This chunk already had eval = FALSE, but that only affects knitting, not manual execution. No markers needed here, since 01-02-setup.Rmd is already fully excluded from workshop.R generation. --- 01-02-setup.Rmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/01-02-setup.Rmd b/01-02-setup.Rmd index d15a9ad..8092a51 100644 --- a/01-02-setup.Rmd +++ b/01-02-setup.Rmd @@ -66,8 +66,8 @@ BiocManager::install(c( The `clusterProfiler`/`enrichplot` chapter mentions `multienrichjam`, a package that converts ORA results from other tools into `enrichplot`-compatible objects. It is **not required** for this workshop, has a large dependency footprint, and is not installed on the workshop VMs. If you'd like to try it on your own computer: ```{r install-multienrichjam, eval = FALSE} -install.packages("remotes") -remotes::install_github("jmw86069/multienrichjam", dependencies = TRUE) +# install.packages("remotes") +# remotes::install_github("jmw86069/multienrichjam", dependencies = TRUE) ```