update docs

Author: idhamari

docs/index.html

@@ -30,7 +30,7 @@ <h2>	Slicer Cochlea Documentation   </h2>
 <p>There are two modules in this extension:</p>
 <ul>
   <li><b>Cochlea Registration</b>: Register and fuse cochlea images from different modalities.
-  <li><b>Cochlea Segmentation</b>: Segment out the cochlea structure, scala tympani and other scalae (media and vestibuli) and measure the length and the size of the scala tympani.</li>
+  <li><b>Cochlea Segmentation</b>: Segment out the cochlea structure, scala tympani and other scalae (media and vestibuli) and measure the length and the size.</li>
 </ul>
 
 <p>Both modules required a few seconds to complete the tasks. They use a customized set of parameters from <a href="https://github.com/SuperElastix/elastix">elastix toolbox</a> (itself using <a href="https://itk.org/">Insight Toolkit (ITK)</a>). The extension will download elastix binaries and other necessary files so it will take some minutes when use first time. For testing, cochlea sample datasets can be downloaded using Slicer Data Store module.</p>
@@ -39,7 +39,9 @@ <h2>	Slicer Cochlea Documentation   </h2>
 
 <p>For more details please read the related publications: </p>
 <ol>
-  <li>Ibraheem Al-Dhamari, Sabine Bauer, Dietrich Paulus, Rania Helal, Friedrich Lisseck and Roland Jacob, (2018), Automatic Cochlear Length and Volume Size Estimation, Accepted in: First  International Workshop on Context-Aware Operating Theater OR 2, MICCAI 2018, Granada Spain.</li>
+  <li> Al-Dhamari I et al. (2022) Automatic Cochlea Multimodal 3D Image Segmentation And Analysis Using Atlas-model-based Method (to be published!).</li>
+  <li> Al-Dhamari I, Helal R, Morozova O, Abdelaziz T, Jacob R, et al. (2022) Automatic intra-subject registration and fusion of multimodal cochlea 3D clinical images. PLOS ONE 17(3): e0264449. https://doi.org/10.1371/journal.pone.0264449. Link </li>
+  <li>Ibraheem Al-Dhamari, Sabine Bauer, Dietrich Paulus, Rania Helal, Friedrich Lisseck and Roland Jacob, (2018), Automatic Cochlear Length and Volume Size Estimation, Accepted in: First  International Workshop on Context-Aware Operating Theater OR 2 MICCAI 2018, Granada Spain.</li>
   <li>Ibraheem Al-Dhamari, Sabine Bauer, Dietrich Paulus, Roland Jacob, (2018), Automatic Cochlea Multi-modal Images Segmentation Using Adaptive Stochastic Gradient Descent. In: CI2018 DC Emerging Issues in Cochlear Implantation, Washington DC, USA.
 <a style="font-family:Helvetica;" href="https://cdn.ymaws.com/www.acialliance.org/resource/resmgr/CI2018/CI2018_PPT/CI2018_DC_Podium_Abstracts.pdf" target="contents" > (link).</a>
 </li>
@@ -83,8 +85,8 @@ <h2>	Slicer Cochlea Documentation   </h2>
 <br><br><br>
 <p> <b>Resources: </b>
 <p>  <a href="https://www.youtube.com/watch?v=oRQ767ojS9o&index=2&list=PLW9iOMxMvikrSyerCLPJhTZnNUDBNpSYO&t=159s"  >Cochlea registration demo.</a>
-<p>  <a href="https://www.youtube.com/watch?v=A_mTcT3eT_c&index=2&list=PLW9iOMxMvikrSyerCLPJhTZnNUDBNpSYO"  >Cochlea segmentation demo.</a>
-<p>  <a href="https://mtixnat.uni-koblenz.de/downloads.html"  >Source-codes and datasets.</a>
+<p>  <a href="https://www.youtube.com/watch?v=jHD3GKepDLs"  >Cochlea segmentation demo.</a>
+
 
 </div>