From f6adfd631ae9a6129badc9ea8c19ec738dddb746 Mon Sep 17 00:00:00 2001
From: Joshua Timmons <joshua.timmons1@gmail.com>
Date: Tue, 2 Jun 2026 19:06:10 -0400
Subject: [PATCH] ci: fix Actions deprecation/notice warnings; bump dev version
 to 0.10.1

- run-on-arch-action@v2 -> @v3: v2 runs on the deprecated Node.js 20; v3 runs on
  node24 with the same inputs (the emulated aarch64 test step).
- setup-python 3.8 -> 3.13 on the build jobs: the 3.8 framework Python ships an
  ancient pip (21.1.1) that emitted the "new release of pip" notice and the
  "Cache entry deserialization failed" warnings. We build abi3 wheels, so the
  build Python version doesn't change the 3.8+ wheel floor (still cp38-abi3).
- windows-latest -> windows-2025: removes the runner-redirect notice and pins
  the image explicitly.
- Bump Cargo.toml dev-default version to 0.10.1 (the release version still comes
  from the git tag at build time).

pyo3 0.24 (already on main) verified at runtime: cp38-abi3 wheel builds and
scripts/smoke_test.py passes unchanged.
---
 .github/workflows/release.yml | 15 +++++++--------
 Cargo.lock                    |  2 +-
 Cargo.toml                    |  2 +-
 3 files changed, 9 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index d20bef5..adc7e83 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -38,7 +38,7 @@ jobs:
       - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
-          python-version: "3.8"
+          python-version: "3.13"
       - name: Set version from release tag
         if: github.event_name == 'release'
         shell: bash
@@ -74,11 +74,10 @@ jobs:
           pytest
       - name: pytest
         if: ${{ !startsWith(matrix.platform.target, 'x86') && matrix.platform.target != 'ppc64' }}
-        uses: uraimo/run-on-arch-action@v2
+        uses: uraimo/run-on-arch-action@v3
         with:
           arch: ${{ matrix.platform.target }}
-          # run-on-arch-action@v2 ships no ubuntu24.04 image; ubuntu22.04 has
-          # the aarch64 image needed to run the emulated test step.
+          # ubuntu22.04 provides the aarch64 image used to run the emulated tests.
           distro: ubuntu22.04
           githubToken: ${{ github.token }}
           install: |
@@ -107,7 +106,7 @@ jobs:
       - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
-          python-version: "3.8"
+          python-version: "3.13"
       - name: Set version from release tag
         if: github.event_name == 'release'
         shell: bash
@@ -143,7 +142,7 @@ jobs:
           '
       - name: pytest
         if: ${{ !startsWith(matrix.platform.target, 'x86') }}
-        uses: uraimo/run-on-arch-action@v2
+        uses: uraimo/run-on-arch-action@v3
         with:
           arch: ${{ matrix.platform.target }}
           distro: alpine_latest
@@ -167,7 +166,7 @@ jobs:
         # 32-bit CPython 3.13, and it's a legacy target with ~no users. Those
         # install from the sdist.
         platform:
-          - runner: windows-latest
+          - runner: windows-2025
             target: x64
             python_arch: x64
           - runner: windows-11-arm
@@ -224,7 +223,7 @@ jobs:
       - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
-          python-version: "3.8"
+          python-version: "3.13"
       - name: Set version from release tag
         if: github.event_name == 'release'
         shell: bash
diff --git a/Cargo.lock b/Cargo.lock
index f49cd0f..bd8a79d 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -196,7 +196,7 @@ checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d"
 
 [[package]]
 name = "seqfold"
-version = "0.10.0"
+version = "0.10.1"
 dependencies = [
  "pyo3",
  "rayon",
diff --git a/Cargo.toml b/Cargo.toml
index 4c39669..822ccf8 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -3,7 +3,7 @@ name = "seqfold"
 # Dev default only. Releases take the version from the GitHub Release tag, which
 # the CI injects here before building (see DEVELOPMENT.md). pyproject.toml reads
 # this via `dynamic = ["version"]`.
-version = "0.10.0"
+version = "0.10.1"
 edition = "2021"
 description = "Predict the minimum free energy structure of nucleic acids"
 license = "MIT"