sampleoutput.csv

,CHROM,POS,REF,ALT,AD_REFLOW,AD_ALTLOW,DPLOW,GQLOW,PLLOW,SNPINDEXLOW,AD_REFHIGH,AD_ALTHIGH,DPHIGH,GQHIGH,PLHIGH,SNPINDEXHIGH,REF_FRQ,DELTASNP,NSNPS,TRICUBEDELTASNP,G,GPRIME,PVALUE,NEGLOG10PVAL,QVALUE,MINDP,TRICUBEDP,CL95,CL99,POSLESS250,POSPLUS250,SNP1,SNP501,SNP27,SNP24,RSNP27,RSNP24
1,Cla97Chr05,21001256,T,C,70,8,78,99,"122,0,2737",0.102564103,36,30,66,99,"1044,0,1318",0.454545455,0.736111111,0.351981352,467,0.173220356,23.6651963,9.941860427,0.001037375,2.984064112,0.019782172,66,52,-0.326923077,-0.423076923,21001006,21001506,T,TGAGCGACGCATAAAATAAAATAACAAACTCCAATGTCTAGTGAGGAAATCGAACTTAGATAAGAGTTTAATCAAGAGGAAACCCTACTCGACGCAGTGACACCTAATGAATAAACAATAAGACAAATGAAAGAAAAAATGGAACTTTATATCTTCATCTTTCAAACTCATAGTTAAAAGAGTAAACAAAAATTTTGTGAAAAATAAGTAAAGACGATTAAGAAGAAAGTTTGCCATACTCAAATTAGACTTGTTTCGAAGAAAAGAATGCAGGGGTAGAAAAGTAATGTAACTAATGGGTAGTTAAATTGAGTATAGCATACTGAGATACTAGTCAATGTGTTAAGAAAATTGTAGGGTTGATTGAAGTTTCTTAGATAGAAGTTATGCTTAAGGACAAGCATTTTTCTAAATTTGGGGGTATGATAACTTGTAGAAATACAAGTTATTATTGTTTTTATTTTAGAAAAATAGAGTTTAAATGGAGAATCATGTTCTAGT,GAAAGTTTGCCATACTCAAATTAGACT,AGTTTGCCATACTCAAATTAGACT,ACCCCTGCATTCTTTTCTTCGAAACAA,CCTGCATTCTTTTCTTCGAAACAA
2,Cla97Chr05,21001257,T,C,39,39,78,99,"1556,0,1483",0.5,18,48,66,99,"1983,0,605",0.727272727,0.395833333,0.227272727,467,0.173220328,7.853667315,9.941858992,0.001037376,2.984063694,0.019782172,66,52,-0.326923077,-0.423076923,21001007,21001507,T,GAGCGACGCATAAAATAAAATAACAAACTCCAATGTCTAGTGAGGAAATCGAACTTAGATAAGAGTTTAATCAAGAGGAAACCCTACTCGACGCAGTGACACCTAATGAATAAACAATAAGACAAATGAAAGAAAAAATGGAACTTTATATCTTCATCTTTCAAACTCATAGTTAAAAGAGTAAACAAAAATTTTGTGAAAAATAAGTAAAGACGATTAAGAAGAAAGTTTGCCATACTCAAATTAGACTTGTTTCGAAGAAAAGAATGCAGGGGTAGAAAAGTAATGTAACTAATGGGTAGTTAAATTGAGTATAGCATACTGAGATACTAGTCAATGTGTTAAGAAAATTGTAGGGTTGATTGAAGTTTCTTAGATAGAAGTTATGCTTAAGGACAAGCATTTTTCTAAATTTGGGGGTATGATAACTTGTAGAAATACAAGTTATTATTGTTTTTATTTTAGAAAAATAGAGTTTAAATGGAGAATCATGTTCTAGTT,AAAGTTTGCCATACTCAAATTAGACTT,GTTTGCCATACTCAAATTAGACTT,TACCCCTGCATTCTTTTCTTCGAAACA,CCCTGCATTCTTTTCTTCGAAACA
3,Cla97Chr05,21001263,G,A,35,40,75,99,"1598,0,1365",0.533333333,17,48,65,99,"1935,0,569",0.738461538,0.371428571,0.205128205,467,0.173220156,6.374961512,9.941850381,0.001037382,2.984061181,0.019782172,65,52,-0.326923077,-0.423076923,21001013,21001513,G,CGCATAAAATAAAATAACAAACTCCAATGTCTAGTGAGGAAATCGAACTTAGATAAGAGTTTAATCAAGAGGAAACCCTACTCGACGCAGTGACACCTAATGAATAAACAATAAGACAAATGAAAGAAAAAATGGAACTTTATATCTTCATCTTTCAAACTCATAGTTAAAAGAGTAAACAAAAATTTTGTGAAAAATAAGTAAAGACGATTAAGAAGAAAGTTTGCCATACTCAAATTAGACTTGTTTCGAAGAAAAGAATGCAGGGGTAGAAAAGTAATGTAACTAATGGGTAGTTAAATTGAGTATAGCATACTGAGATACTAGTCAATGTGTTAAGAAAATTGTAGGGTTGATTGAAGTTTCTTAGATAGAAGTTATGCTTAAGGACAAGCATTTTTCTAAATTTGGGGGTATGATAACTTGTAGAAATACAAGTTATTATTGTTTTTATTTTAGAAAAATAGAGTTTAAATGGAGAATCATGTTCTAGTTTGGGTT,TGCCATACTCAAATTAGACTTGTTTCG,CATACTCAAATTAGACTTGTTTCG,CTTTTCTACCCCTGCATTCTTTTCTTC,TTCTACCCCTGCATTCTTTTCTTC
4,Cla97Chr05,21001279,G,A,68,13,81,99,"306,0,2756",0.160493827,37,31,68,99,"1174,0,1495",0.455882353,0.704697987,0.295388526,467,0.173219699,15.7386903,9.941827417,0.001037398,2.98405448,0.019782172,68,52,-0.326923077,-0.423076923,21001029,21001529,G,ACAAACTCCAATGTCTAGTGAGGAAATCGAACTTAGATAAGAGTTTAATCAAGAGGAAACCCTACTCGACGCAGTGACACCTAATGAATAAACAATAAGACAAATGAAAGAAAAAATGGAACTTTATATCTTCATCTTTCAAACTCATAGTTAAAAGAGTAAACAAAAATTTTGTGAAAAATAAGTAAAGACGATTAAGAAGAAAGTTTGCCATACTCAAATTAGACTTGTTTCGAAGAAAAGAATGCAGGGGTAGAAAAGTAATGTAACTAATGGGTAGTTAAATTGAGTATAGCATACTGAGATACTAGTCAATGTGTTAAGAAAATTGTAGGGTTGATTGAAGTTTCTTAGATAGAAGTTATGCTTAAGGACAAGCATTTTTCTAAATTTGGGGGTATGATAACTTGTAGAAATACAAGTTATTATTGTTTTTATTTTAGAAAAATAGAGTTTAAATGGAGAATCATGTTCTAGTTTGGGTTAAATTCCATTGTTAAA,GACTTGTTTCGAAGAAAAGAATGCAGG,TTGTTTCGAAGAAAAGAATGCAGG,CCCATTAGTTACATTACTTTTCTACCC,ATTAGTTACATTACTTTTCTACCC
5,Cla97Chr05,21001280,G,T,68,13,81,99,"306,0,2756",0.160493827,38,31,69,99,"1174,0,1495",0.449275362,0.706666667,0.288781535,467,0.17321967,15.23083782,9.941825982,0.001037399,2.984054061,0.019782172,69,52,-0.326923077,-0.423076923,21001030,21001530,G,CAAACTCCAATGTCTAGTGAGGAAATCGAACTTAGATAAGAGTTTAATCAAGAGGAAACCCTACTCGACGCAGTGACACCTAATGAATAAACAATAAGACAAATGAAAGAAAAAATGGAACTTTATATCTTCATCTTTCAAACTCATAGTTAAAAGAGTAAACAAAAATTTTGTGAAAAATAAGTAAAGACGATTAAGAAGAAAGTTTGCCATACTCAAATTAGACTTGTTTCGAAGAAAAGAATGCAGGGGTAGAAAAGTAATGTAACTAATGGGTAGTTAAATTGAGTATAGCATACTGAGATACTAGTCAATGTGTTAAGAAAATTGTAGGGTTGATTGAAGTTTCTTAGATAGAAGTTATGCTTAAGGACAAGCATTTTTCTAAATTTGGGGGTATGATAACTTGTAGAAATACAAGTTATTATTGTTTTTATTTTAGAAAAATAGAGTTTAAATGGAGAATCATGTTCTAGTTTGGGTTAAATTCCATTGTTAAAT,ACTTGTTTCGAAGAAAAGAATGCAGGG,TGTTTCGAAGAAAAGAATGCAGGG,ACCCATTAGTTACATTACTTTTCTACC,CATTAGTTACATTACTTTTCTACC
6,Cla97Chr05,21001332,G,T,66,10,76,99,"155,0,2500",0.131578947,40,34,74,99,"1026,0,1483",0.459459459,0.706666667,0.327880512,467,0.173218183,20.24871078,9.94175135,0.001037451,2.984032283,0.019782172,74,52,-0.326923077,-0.423076923,21001082,21001582,G,AGGAAACCCTACTCGACGCAGTGACACCTAATGAATAAACAATAAGACAAATGAAAGAAAAAATGGAACTTTATATCTTCATCTTTCAAACTCATAGTTAAAAGAGTAAACAAAAATTTTGTGAAAAATAAGTAAAGACGATTAAGAAGAAAGTTTGCCATACTCAAATTAGACTTGTTTCGAAGAAAAGAATGCAGGGGTAGAAAAGTAATGTAACTAATGGGTAGTTAAATTGAGTATAGCATACTGAGATACTAGTCAATGTGTTAAGAAAATTGTAGGGTTGATTGAAGTTTCTTAGATAGAAGTTATGCTTAAGGACAAGCATTTTTCTAAATTTGGGGGTATGATAACTTGTAGAAATACAAGTTATTATTGTTTTTATTTTAGAAAAATAGAGTTTAAATGGAGAATCATGTTCTAGTTTGGGTTAAATTCCATTGTTAAATCTCCCTATGTGTTTTACTCTTGTGAATTGATGAAGATAAATACTTGAAACTT,TAGTTAAATTGAGTATAGCATACTGAG,TTAAATTGAGTATAGCATACTGAG,AATTTTCTTAACACATTGACTAGTATC,TTTCTTAACACATTGACTAGTATC
7,Cla97Chr05,21001334,T,G,31,44,75,99,"1521,0,936",0.586666667,22,52,74,99,"2013,0,547",0.702702703,0.355704698,0.116036036,467,0.173218126,2.196461892,9.941748479,0.001037453,2.984031446,0.019782172,74,52,-0.326923077,-0.423076923,21001084,21001584,T,GAAACCCTACTCGACGCAGTGACACCTAATGAATAAACAATAAGACAAATGAAAGAAAAAATGGAACTTTATATCTTCATCTTTCAAACTCATAGTTAAAAGAGTAAACAAAAATTTTGTGAAAAATAAGTAAAGACGATTAAGAAGAAAGTTTGCCATACTCAAATTAGACTTGTTTCGAAGAAAAGAATGCAGGGGTAGAAAAGTAATGTAACTAATGGGTAGTTAAATTGAGTATAGCATACTGAGATACTAGTCAATGTGTTAAGAAAATTGTAGGGTTGATTGAAGTTTCTTAGATAGAAGTTATGCTTAAGGACAAGCATTTTTCTAAATTTGGGGGTATGATAACTTGTAGAAATACAAGTTATTATTGTTTTTATTTTAGAAAAATAGAGTTTAAATGGAGAATCATGTTCTAGTTTGGGTTAAATTCCATTGTTAAATCTCCCTATGTGTTTTACTCTTGTGAATTGATGAAGATAAATACTTGAAACTTTT,GTTAAATTGAGTATAGCATACTGAGAT,AAATTGAGTATAGCATACTGAGAT,ACAATTTTCTTAACACATTGACTAGTA,ATTTTCTTAACACATTGACTAGTA
8,Cla97Chr05,21001426,G,A,37,28,65,99,"927,0,1276",0.430769231,37,22,59,99,"726,0,1370",0.372881356,0.596774194,-0.057887875,467,0.173215495,0.431302055,9.941616437,0.001037545,2.983992916,0.019782172,59,52,-0.326923077,-0.423076923,21001176,21001676,G,TAGTTAAAAGAGTAAACAAAAATTTTGTGAAAAATAAGTAAAGACGATTAAGAAGAAAGTTTGCCATACTCAAATTAGACTTGTTTCGAAGAAAAGAATGCAGGGGTAGAAAAGTAATGTAACTAATGGGTAGTTAAATTGAGTATAGCATACTGAGATACTAGTCAATGTGTTAAGAAAATTGTAGGGTTGATTGAAGTTTCTTAGATAGAAGTTATGCTTAAGGACAAGCATTTTTCTAAATTTGGGGGTATGATAACTTGTAGAAATACAAGTTATTATTGTTTTTATTTTAGAAAAATAGAGTTTAAATGGAGAATCATGTTCTAGTTTGGGTTAAATTCCATTGTTAAATCTCCCTATGTGTTTTACTCTTGTGAATTGATGAAGATAAATACTTGAAACTTTTTGAACCTTAAACGCATGCTTTGATGCAGGAACACAAGCAATTTATGAATGCGATATCAATCAGAAATGCAAGGCAGTGGAAAATCAGACGAA,GGACAAGCATTTTTCTAAATTTGGGGG,CAAGCATTTTTCTAAATTTGGGGG,AACTTGTATTTCTACAAGTTATCATAC,TTGTATTTCTACAAGTTATCATAC