easifish/modules.json at main · JaneliaSciComp/easifish · GitHub

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{
    "name": "JaneliaSciComp/easifish",
    "homePage": "https://github.com/JaneliaSciComp/easifish",
    "repos": {
        "git@github.com:JaneliaSciComp/nextflow-modules.git": {
            "modules": {
                "janelia": {
                    "bigstream/computeinverse": {
                        "branch": "main",
                        "git_sha": "492bccec34f3d6560d529df7fa0629db05e17720",
                        "installed_by": ["modules"]
                    },
                    "bigstream/correlationmetric": {
                        "branch": "main",
                        "git_sha": "492bccec34f3d6560d529df7fa0629db05e17720",
                        "installed_by": ["modules"]
                    },
                    "bigstream/deform": {
                        "branch": "main",
                        "git_sha": "492bccec34f3d6560d529df7fa0629db05e17720",
                        "installed_by": ["modules"]
                    },
                    "bigstream/foregroundmask": {
                        "branch": "main",
                        "git_sha": "492bccec34f3d6560d529df7fa0629db05e17720",
                        "installed_by": ["modules"]
                    },
                    "bigstream/globalalign": {
                        "branch": "main",
                        "git_sha": "492bccec34f3d6560d529df7fa0629db05e17720",
                        "installed_by": ["modules"]
                    },
                    "bigstream/localalign": {
                        "branch": "main",
                        "git_sha": "492bccec34f3d6560d529df7fa0629db05e17720",
                        "installed_by": ["modules"]
                    },
                    "bigstream/transformcoords": {
                        "branch": "main",
                        "git_sha": "492bccec34f3d6560d529df7fa0629db05e17720",
                        "installed_by": ["modules"]
                    },
                    "omezarrtools/multiscale": {
                        "branch": "main",
                        "git_sha": "d1bc1904f405348fda80e5a75cafe815a7b0ab28",
                        "installed_by": ["multiscale"]
                    },
                    "segtools/distributed/cellpose": {
                        "branch": "main",
                        "git_sha": "9f77e3dfa9702442106c68b96e222f07888133a0",
                        "installed_by": ["modules"]
                    },
                    "segtools/distributed/mergelabels": {
                        "branch": "main",
                        "git_sha": "9f77e3dfa9702442106c68b96e222f07888133a0",
                        "installed_by": ["modules"]
                    },
                    "spots/fishspots": {
                        "branch": "main",
                        "git_sha": "b5d6f2ee5878043ca6582bb588a74b4843119021",
                        "installed_by": ["modules"]
                    },
                    "spots/rsfish": {
                        "branch": "main",
                        "git_sha": "29e35237501bc7a5cbdb3ad58bfa4bcdcd6896e1",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "janelia": {
                    "dask_start": {
                        "branch": "main",
                        "git_sha": "2fbde8548e2677a85bc0c19161ce03b81d5b6048",
                        "installed_by": ["subworkflows"]
                    },
                    "dask_stop": {
                        "branch": "main",
                        "git_sha": "4261356a66340734ba86409fb1c7b4fe50dde206",
                        "installed_by": ["subworkflows"]
                    },
                    "multiscale": {
                        "branch": "main",
                        "git_sha": "85c14f04783f9e832ed322572adf7901402e02a8",
                        "installed_by": ["subworkflows"]
                    },
                    "spark_start": {
                        "branch": "main",
                        "git_sha": "8617ca37d28ddba70b0be463378218097bf8baa0",
                        "installed_by": ["subworkflows"]
                    },
                    "spark_stop": {
                        "branch": "main",
                        "git_sha": "857f06c09d38e902268376a73b953f135d3a61e2",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        },
        "https://github.com/nf-core/modules.git": {
            "subworkflows": {
                "nf-core": {
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "1a545fcbd762911c21a64ced3dbef99b2b51ac75",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "a3fb7351b1fdb2b1de282b765816bbea190e86a8",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "a7b27fd25bfa8dcc07d299e88bd790585901a436",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}