Issues

• FitLDA issue

  JEFworks-Lab/STdeconvolve#74 · Filter by author Aligon1 opened on Jan 23, 2026

• Running tutorial error at vizAllTopics

  JEFworks-Lab/STdeconvolve#73 · Filter by author LJ-dotcom opened on Nov 5, 2025
  1

• Error when running restrictCorpus

  JEFworks-Lab/STdeconvolve#72 · Filter by author cathalgking opened on Aug 27, 2025
  2

• Spatial topic infiltration

  JEFworks-Lab/STdeconvolve#66 · Filter by author Piorczyn opened on Jan 31, 2025

• Error in restrictCorpus() in default settings.

  JEFworks-Lab/STdeconvolve#61 · Filter by author lelandwilliams opened on Oct 24, 2024

• Question Regarding the Use of Diebold-Mariano Test

  JEFworks-Lab/STdeconvolve#60 · Filter by author xieaq opened on Aug 9, 2024

• Error with annotateCellTypesGSEA function

  JEFworks-Lab/STdeconvolve#58 · Filter by author odunola26 opened on Jun 26, 2024
  4

• How to add cell types to deconvoluted 10x Visium data?

  JEFworks-Lab/STdeconvolve#57 · Filter by author 532at opened on Jun 5, 2024
  3

• 'x' must be an array of at least two dimensions error

  JEFworks-Lab/STdeconvolve#56 · Filter by author wangjiawen2013 opened on May 28, 2024
  1

• Question about STdeconvolve: MOB layer transcriptional profiles

  JEFworks-Lab/STdeconvolve#55 · Filter by author ZZYMaxwell opened on Apr 18, 2024
  1

• InferCNV from STdeconvolve data

  JEFworks-Lab/STdeconvolve#53 · Filter by author rstagnit opened on Apr 9, 2024
  2

• Error when using annotateCellTypesGSEA

  JEFworks-Lab/STdeconvolve#52 · Filter by author d-henness opened on Feb 27, 2024
  3

• Visium 'se' object creation error

  JEFworks-Lab/STdeconvolve#50 · Filter by author Umaarasu opened on Feb 14, 2024
  3

• Match annotation and deconvolved cell types

  JEFworks-Lab/STdeconvolve#43 · Filter by author xieaq opened on Oct 17, 2023
  5

• Giotto Object to STdeconvolve, and general questions about workflow, choosing K, cell type annotation, etc

  useful info for new users
  JEFworks-Lab/STdeconvolve#35 · Filter by author chrkuo opened on Apr 4, 2023
  12

• Cell volumes for MPOA reproduction

  reproduce mpoa analysis
  JEFworks-Lab/STdeconvolve#34 · Filter by author paulmorio opened on Mar 30, 2023
  5

• Could not find function "simulateBregmaSpots"

  reproduce mpoa analysis
  JEFworks-Lab/STdeconvolve#29 · Filter by author LYxiaotai opened on Dec 6, 2022
  2

• Using stdeconvolve with normalized / integrated data

  useful info for new users
  JEFworks-Lab/STdeconvolve#25 · Filter by author Acaro12 opened on Oct 27, 2022
  6

• How to annotate cells in the STdeconvolve

  useful info for new users
  JEFworks-Lab/STdeconvolve#19 · Filter by author ysq1770368148 opened on Aug 10, 2022
  6

• Tutorial requests

  documentation
  JEFworks-Lab/STdeconvolve#5 · Filter by author JEFworks opened on Dec 9, 2021
  1

• Suggestions to improve user experienced

  enhancement
  JEFworks-Lab/STdeconvolve#1 · Filter by author JEFworks opened on Jul 1, 2021
  7