From 3019dcc59c6d0a23c153494ee433ef088b2feb75 Mon Sep 17 00:00:00 2001
From: frederick <frederick.allars@diamond.ac.uk>
Date: Wed, 22 Jul 2026 17:00:00 +0100
Subject: [PATCH 1/2] trying varoius changes to see if this allows the
 workflows system to display the ePSIC notebook workflow

---
 e02/templates/Notebook.yaml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/e02/templates/Notebook.yaml b/e02/templates/Notebook.yaml
index fd9c17a..b676254 100644
--- a/e02/templates/Notebook.yaml
+++ b/e02/templates/Notebook.yaml
@@ -1,20 +1,20 @@
 apiVersion: argoproj.io/v1alpha1
 kind: ClusterWorkflowTemplate
 metadata:
-  name: Calibrate4DSTEM
+  name: calibrate-ptycho
   labels:
     workflows.diamond.ac.uk/science-group-imaging: "true"
   annotations:
     workflows.argoproj.io/title: Calibrate 4D STEM data
     workflows.argoproj.io/description: |
-      A utility which takes in a 4D STEM data set and outs the approximate real space pixel size, measured camera length and scan rotation (based off dpc).
+      A utility which takes in a 4D STEM data set and outs the approximate real space pixel size, measured camera length and scan rotation, based off dpc
     workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
     workflows.diamond.ac.uk/parameter-schema: |
       {{- .Files.Get "schema/notebook_Schema.json" | nindent 6 }}
     workflows.diamond.ac.uk/ui-schema: |
       {{- .Files.Get "schema/notebook_ui.json" | nindent 6 }}
 spec:
-  entrypoint: mount-files
+  entrypoint: calibration-notebook
   arguments:
     parameters:
     - name: visitdir
@@ -112,9 +112,9 @@ spec:
           resources:
             requests:
               cpu: 10
-              memory: 30Gi
+              memory: 50Gi
             limits:
               cpu: 10
-              memory: 30Gi
+              memory: 50Gi
 
         
\ No newline at end of file

From 10dfe83a51ca1ccbf9df0438c7a314aea1c1a935 Mon Sep 17 00:00:00 2001
From: frederick <frederick.allars@diamond.ac.uk>
Date: Wed, 22 Jul 2026 17:08:26 +0100
Subject: [PATCH 2/2] fixing errors: changing workflows into workflow

---
 e02/templates/Notebook.yaml | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/e02/templates/Notebook.yaml b/e02/templates/Notebook.yaml
index b676254..e82a625 100644
--- a/e02/templates/Notebook.yaml
+++ b/e02/templates/Notebook.yaml
@@ -5,7 +5,7 @@ metadata:
   labels:
     workflows.diamond.ac.uk/science-group-imaging: "true"
   annotations:
-    workflows.argoproj.io/title: Calibrate 4D STEM data
+    workflows.argoproj.io/title: Calibrate ptycho STEM data
     workflows.argoproj.io/description: |
       A utility which takes in a 4D STEM data set and outs the approximate real space pixel size, measured camera length and scan rotation, based off dpc
     workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
@@ -73,7 +73,7 @@ spec:
         image: gitlab.diamond.ac.uk:5050/scisoft/ptychography/dimtools/mib2x
         volumeMounts:
         - name: session
-          mountPath: "{{`{{ workflows.parameters.visitdir }}`}}"
+          mountPath: "{{`{{ workflow.parameters.visitdir }}`}}"
         - name: tmp
           mountPath: /tmp
         - name: software
@@ -85,12 +85,12 @@ spec:
           OUTPUT="{{`{{workflow.parameters.visitdir}}`}}"/processing/workflows/
           python -m papermill "{{`{{workflow.parameters.visitdir}}`}}"/processing/workflows/Ptycho_calibration.ipynb $OUTPUT/Calibrate-notebook.ipynb \
             -p visit "{{`{{ workflow.parameters.visitdir }}`}}"
-            -p sample "{{`{{ workflows.parameters.sample }}`}}"
-            -p timestamp "{{`{{workflows.parameters.timestamp}}`}}"
+            -p sample "{{`{{ workflow.parameters.sample }}`}}"
+            -p timestamp "{{`{{workflow.parameters.timestamp}}`}}"
             -p maskpath /software/29042024_12bitmask2.h5
-            -p outpath "{{`{{workflows.parameters.outpath}}`}}"
-            -p lower "{{`{{workflows.parameters.thresh_lower}}`}}"
-            -p upper "{{`{{workflows.parameters.thresh_upper}}`}}"
+            -p outpath "{{`{{workflow.parameters.outpath}}`}}"
+            -p lower "{{`{{workflow.parameters.thresh_lower}}`}}"
+            -p upper "{{`{{workflow.parameters.thresh_upper}}`}}"
             > $OUTPUT/papermill.log 2>&1
 
           python  -m jupyter nbconvert $OUTPUT/Calibrate-notebook.ipynb \