Print a normal error message if not a single read has been matched with barcode pattern.
|
processed_fq1, processed_fq2, total_reads_count = extract_umi(fq12_chunks, |
|
fq1_pattern, |
|
fq2_pattern, |
|
args.find_in_reverse_complement) |
if not processed_fq1.size or not processed_fq2.size:
"Something happend wrong with parsing barcode from FASTQ..."
Print a normal error message if not a single read has been matched with barcode pattern.
pyigmap/bin/pyumi/run.py
Lines 46 to 49 in c2285b2