Skip to content
This repository was archived by the owner on Jul 19, 2021. It is now read-only.
This repository was archived by the owner on Jul 19, 2021. It is now read-only.

Error while running kmercountmulti.sh #33

Description

@Oieswarya

I am trying to use the kmercountmulti for counting the kmers for ecoli long reads fasta file on my linux server but I am having this error:

bbmap//calcmem.sh: line 75: [: -v: unary operator expected
java -ea -Xmx500m -cp /home/bbmap/current/ jgi.KmerCountMulti in=/home/eColi_LR_SL.fasta sweep=16,32,64 out=hist1_eColi_LR
Executing jgi.KmerCountMulti [in=/home/eColi_LR_SL.fasta, sweep=16,32,64, out=hist1_eColi_LR]

Exception in thread "main" java.lang.ArrayStoreException: cardinality.LogLog2
at cardinality.MultiLogLog.(MultiLogLog.java:30)
at cardinality.MultiLogLog.(MultiLogLog.java:11)
at jgi.KmerCountMulti.(KmerCountMulti.java:149)
at jgi.KmerCountMulti.main(KmerCountMulti.java:49)

My java version is:

openjdk version "1.8.0_272"
OpenJDK Runtime Environment (build 1.8.0_272-b10)
OpenJDK 64-Bit Server VM (build 25.272-b10, mixed mode)

Kindly help.

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions