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m-philippsm-philipps
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update vis spec to match publication
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‎Benchmark-Models/Lang_PLOSComputBiol2024/visualizationSpecification_Lang_PLOSComputBiol2024.tsv‎

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plotId plotName plotTypeSimulation plotTypeData datasetId xValues xLabel yValues yOffset yLabel legendEntry xScale yScale
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plot1 wt LinePlot MeanAndSD Nucleus time Time [sec] obs_cycA__nuc_median 0 Abundance (normalized) obs_cycA__nuc_median lin lin
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plot1 wt LinePlot MeanAndSD Nucleus time Time [sec] obs_cycB1__nuc_median 0 Abundance (normalized) obs_cycB1__nuc_median lin lin
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plot1 wt LinePlot MeanAndSD Nucleus time Time [sec] obs_cycE__nuc_median 0 Abundance (normalized) obs_cycE__nuc_median lin lin
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plot1 wt LinePlot MeanAndSD Nucleus time Time [sec] obs_E2F1__nuc_median 0 Abundance (normalized) obs_E2F1__nuc_median lin lin
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plot2 wt LinePlot MeanAndSD Nucleus time Time [sec] obs_pRB__nuc_median 0 Abundance (normalized) obs_pRB__nuc_median lin lin
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plot2 wt LinePlot MeanAndSD Nucleus time Time [sec] obs_Skp2__nuc_median 0 Abundance (normalized) obs_Skp2__nuc_median lin lin
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plot2 wt LinePlot MeanAndSD Nucleus time Time [sec] obs_p21__nuc_median 0 Abundance (normalized) obs_p21__nuc_median lin lin
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plot2 wt LinePlot MeanAndSD Nucleus time Time [sec] obs_p27__nuc_median 0 Abundance (normalized) obs_p27__nuc_median lin lin
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plot3 wt LinePlot MeanAndSD Cytoplasm time Time [sec] obs_cycA__cyt_median 0 Abundance (normalized) obs_cycA__cyt_median lin lin
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plot3 wt LinePlot MeanAndSD Cytoplasm time Time [sec] obs_cycB1__cyt_median 0 Abundance (normalized) obs_cycB1__cyt_median lin lin
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plot3 wt LinePlot MeanAndSD Cytoplasm time Time [sec] obs_cycE__cyt_median 0 Abundance (normalized) obs_cycE__cyt_median lin lin
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plot3 wt LinePlot MeanAndSD Cytoplasm time Time [sec] obs_E2F1__cyt_median 0 Abundance (normalized) obs_E2F1__cyt_median lin lin
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plot4 wt LinePlot MeanAndSD Cytoplasm time Time [sec] obs_pRB__cyt_median 0 Abundance (normalized) obs_pRB__cyt_median lin lin
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plot4 wt LinePlot MeanAndSD Cytoplasm time Time [sec] obs_Skp2__cyt_median 0 Abundance (normalized) obs_Skp2__cyt_median lin lin
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plot4 wt LinePlot MeanAndSD Cytoplasm time Time [sec] obs_p21__cyt_median 0 Abundance (normalized) obs_p21__cyt_median lin lin
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plot4 wt LinePlot MeanAndSD Cytoplasm time Time [sec] obs_p27__cyt_median 0 Abundance (normalized) obs_p27__cyt_median lin lin
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plotId plotName plotTypeSimulation plotTypeData datasetId xValues xLabel yValues yOffset yLabel legendEntry xScale yScale color
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Fig7_a wildtype Nucleus LinePlot MeanAndSD Nucleus time Time [sec] obs_cycA__nuc_median 0 Abundance (normalized) CCNA (obs_cycA__nuc_median) lin lin green
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Fig7_a wildtype Nucleus LinePlot MeanAndSD Nucleus time Time [sec] obs_cycB1__nuc_median 0 Abundance (normalized) CCNB1 (obs_cycB1__nuc_median) lin lin orange
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Fig7_a wildtype Nucleus LinePlot MeanAndSD Nucleus time Time [sec] obs_cycE__nuc_median 0 Abundance (normalized) CCNE (obs_cycE__nuc_median) lin lin blue
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Fig7_c wildtype Nucleus LinePlot MeanAndSD Nucleus time Time [sec] obs_E2F1__nuc_median 0 Abundance (normalized) E2F1 (obs_E2F1__nuc_median) lin lin yellow
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Fig7_c wildtype Nucleus LinePlot MeanAndSD Nucleus time Time [sec] obs_pRB__nuc_median 0 Abundance (normalized) RB1 (obs_pRB__nuc_median) lin lin red
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Fig7_c wildtype Nucleus LinePlot MeanAndSD Nucleus time Time [sec] obs_Skp2__nuc_median 0 Abundance (normalized) SKP2 (obs_Skp2__nuc_median) lin lin dimgray
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Fig7_e wildtype Nucleus LinePlot MeanAndSD Nucleus time Time [sec] obs_p21__nuc_median 0 Abundance (normalized) CDKN1A (obs_p21__nuc_median) lin lin darkviolet
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Fig7_e wildtype Nucleus LinePlot MeanAndSD Nucleus time Time [sec] obs_p27__nuc_median 0 Abundance (normalized) CDKN1B (obs_p27__nuc_median) lin lin cyan
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Fig7_b wildtype Cytoplasm LinePlot MeanAndSD Cytoplasm time Time [sec] obs_cycA__cyt_median 0 Abundance (normalized) CCNA (obs_cycA__cyt_median) lin lin green
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Fig7_b wildtype Cytoplasm LinePlot MeanAndSD Cytoplasm time Time [sec] obs_cycB1__cyt_median 0 Abundance (normalized) CCNB1 (obs_cycB1__cyt_median) lin lin orange
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Fig7_b wildtype Cytoplasm LinePlot MeanAndSD Cytoplasm time Time [sec] obs_cycE__cyt_median 0 Abundance (normalized) CCNE (obs_cycE__cyt_median) lin lin blue
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Fig7_d wildtype Cytoplasm LinePlot MeanAndSD Cytoplasm time Time [sec] obs_E2F1__cyt_median 0 Abundance (normalized) E2F1 (obs_E2F1__cyt_median) lin lin yellow
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Fig7_d wildtype Cytoplasm LinePlot MeanAndSD Cytoplasm time Time [sec] obs_pRB__cyt_median 0 Abundance (normalized) RB1 (obs_pRB__cyt_median) lin lin blue
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Fig7_d wildtype Cytoplasm LinePlot MeanAndSD Cytoplasm time Time [sec] obs_Skp2__cyt_median 0 Abundance (normalized) SKP2 (obs_Skp2__cyt_median) lin lin dimgray
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Fig7_f wildtype Cytoplasm LinePlot MeanAndSD Cytoplasm time Time [sec] obs_p21__cyt_median 0 Abundance (normalized) CDKN1A (obs_p21__cyt_median) lin lin darkviolet
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Fig7_f wildtype Cytoplasm LinePlot MeanAndSD Cytoplasm time Time [sec] obs_p27__cyt_median 0 Abundance (normalized) CDKN1B (obs_p27__cyt_median) lin lin cyan

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