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plakrisenkoplakrisenko
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add visualization spec for Raimundez model (#288)
* add visualization spec for Raimundez model * fix titles and legends * visualization specifications for figures in the publication
1 parent 5b1c38c commit 6c43db1

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‎Benchmark-Models/Raimundez_PCB2020/Raimundez_PCB2020.yaml‎

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- observables_Raimundez_PCB2020.tsv
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sbml_files:
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- model_Raimundez_PCB2020.xml
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visualization_files:
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- visualizationSpecification_Raimundez_PCB2020.tsv

‎Benchmark-Models/Raimundez_PCB2020/measurementData_Raimundez_PCB2020.tsv‎

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‎Benchmark-Models/Raimundez_PCB2020/simulatedData_Raimundez_PCB2020.tsv‎

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‎Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020.tsv‎

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‎Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_Figure2C.tsv‎

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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plot61 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__0EGF
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plot61 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__5EGF
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plot64 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__0EGF
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plot64 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__5EGF
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plot70 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__0EGF
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plot70 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__5EGF
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plot76 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__0EGF
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plot76 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__5EGF
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plot62 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__0EGF
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plot62 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__5EGF
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plot65 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__0EGF
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plot65 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__5EGF
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plot71 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__0EGF
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plot71 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__5EGF
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plot77 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__0EGF
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plot77 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__5EGF
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plot60 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__0EGF
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plot60 Full medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID5_MKN1_FM_1min CET_level 0 0 ID5_MKN1_FM_1min__5EGF
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plot63 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__0EGF
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plot63 Full medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID5_MKN1_FM_3min CET_level 0 0 ID5_MKN1_FM_3min__5EGF
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plot69 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__0EGF
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plot69 Full medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID5_MKN1_FM_15min CET_level 0 0 ID5_MKN1_FM_15min__5EGF
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plot75 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__0EGF
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plot75 Full medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID5_MKN1_FM_240min CET_level 0 0 ID5_MKN1_FM_240min__5EGF

‎Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_Figure2D.tsv‎

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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plot78 Starvation medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID6_MKN1_HM_1min CET_level 0 0 ID6_MKN1_HM_1min__0EGF
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plot78 Starvation medium, MKN1 cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID6_MKN1_HM_1min CET_level 0 0 ID6_MKN1_HM_1min__30EGF
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plot79 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID6_MKN1_HM_3min CET_level 0 0 ID6_MKN1_HM_3min__0EGF
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plot79 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID6_MKN1_HM_3min CET_level 0 0 ID6_MKN1_HM_3min__30EGF
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plot3 Starvation medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID6_MKN1_HM_15min CET_level 0 0 ID6_MKN1_HM_15min__0EGF
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plot3 Starvation medium, MKN1 cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID6_MKN1_HM_15min CET_level 0 0 ID6_MKN1_HM_15min__30EGF
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plot4 Starvation medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID6_MKN1_HM_240min CET_level 0 0 ID6_MKN1_HM_240min__0EGF
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plot4 Starvation medium, MKN1 cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID6_MKN1_HM_240min CET_level 0 0 ID6_MKN1_HM_240min__30EGF

‎Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_Figure3C.tsv‎

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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plot6 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__0EGF
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plot6 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__5EGF
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plot9 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__0EGF
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plot9 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__5EGF
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plot12 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__0EGF
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plot12 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__5EGF
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plot15 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__0EGF
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plot15 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__5EGF
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plot7 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__0EGF
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plot7 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__5EGF
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plot10 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__0EGF
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plot10 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__5EGF
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plot13 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__0EGF
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plot13 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__5EGF
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plot16 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__0EGF
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plot16 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 5 ng/ml EGF pMAPK_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__5EGF
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plot5 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__0EGF
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plot5 Full medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID7_HS746T_FM_1min CET_level 0 0 ID7_HS746T_FM_1min__5EGF
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plot8 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__0EGF
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plot8 Full medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID7_HS746T_FM_3min CET_level 0 0 ID7_HS746T_FM_3min__5EGF
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plot11 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__0EGF
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plot11 Full medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID7_HS746T_FM_15min CET_level 0 0 ID7_HS746T_FM_15min__5EGF
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plot14 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__0EGF
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plot14 Full medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 5 ng/ml EGF pAKT_ID7_HS746T_FM_240min CET_level 0 0 ID7_HS746T_FM_240min__5EGF

‎Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_Figure3D.tsv‎

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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plot20 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__0EGF
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plot20 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__30EGF
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plot23 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__0EGF
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plot23 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__30EGF
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plot26 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__0EGF
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plot26 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__30EGF
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plot29 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__0EGF
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plot29 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__30EGF
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plot21 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__0EGF
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plot21 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 30 ng/ml EGF pMAPK_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__30EGF
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plot24 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__0EGF
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plot24 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 30 ng/ml EGF pMAPK_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__30EGF
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plot27 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__0EGF
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plot27 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 30 ng/ml EGF pMAPK_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__30EGF
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plot30 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 0 ng/ml EGF pMAPK_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__0EGF
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plot30 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pMAPK lin 30 ng/ml EGF pMAPK_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__30EGF
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plot19 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__0EGF
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plot19 Starvation medium, Hs746T cell line, t = 1 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 30 ng/ml EGF pAKT_ID8_HS746T_HM_1min CET_level 0 0 ID8_HS746T_HM_1min__30EGF
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plot22 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__0EGF
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plot22 Starvation medium, Hs746T cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 30 ng/ml EGF pAKT_ID8_HS746T_HM_3min CET_level 0 0 ID8_HS746T_HM_3min__30EGF
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plot25 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__0EGF
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plot25 Starvation medium, Hs746T cell line, t = 15 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 30 ng/ml EGF pAKT_ID8_HS746T_HM_15min CET_level 0 0 ID8_HS746T_HM_15min__30EGF
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plot28 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 0 ng/ml EGF pAKT_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__0EGF
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plot28 Starvation medium, Hs746T cell line, t = 240 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pAKT lin 30 ng/ml EGF pAKT_ID8_HS746T_HM_240min CET_level 0 0 ID8_HS746T_HM_240min__30EGF

‎Benchmark-Models/Raimundez_PCB2020/visualizationSpecification_Raimundez_PCB2020_FigureS3.tsv‎

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plotId plotName plotTypeData plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset datasetId
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plot73 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pEGFR lin pEGFR pEGFR_ID2_MKN1_HM time 0 0 ID2_MKN1_HM
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plot74 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pMAPK lin pMAPK pMAPK_ID2_MKN1_HM time 0 0 ID2_MKN1_HM
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plot72 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pAKT lin pAKT pAKT_ID2_MKN1_HM time 0 0 ID2_MKN1_HM
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plot40 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pEGFR lin pEGFR pEGFR_ID9b_MKN1_HM_1EGF time 0 0 MKN1_HM_1EGF
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plot40 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pEGFR lin pEGFR pEGFR_ID9b_MKN1_HM_5EGF time 0 0 ID9b_MKN1_HM_5EGF
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plot41 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pMAPK lin pMAPK pMAPK_ID9b_MKN1_HM_1EGF time 0 0 MKN1_HM_1EGF
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plot41 Starvation medium, MKN1 cell line MeanAndSD LinePlot time [min] lin pMAPK lin pMAPK pMAPK_ID9b_MKN1_HM_5EGF time 0 0 ID9b_MKN1_HM_5EGF
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plot17 Full medium, MKN1 cell line MeanAndSD LinePlot CET [$\mu$g/ml] lin EGFR lin 0 ng/ml EGF EGFR_ID3_MKN1_FM CET_level 0 0 ID3_MKN1_FM__0EGF
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plot17 Full medium, MKN1 cell line MeanAndSD LinePlot CET [$\mu$g/ml] lin EGFR lin 5 ng/ml EGF EGFR_ID3_MKN1_FM CET_level 0 0 ID3_MKN1_FM__5EGF
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plot18 Full medium, MKN1 cell line MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID3_MKN1_FM CET_level 0 0 ID3_MKN1_FM__0EGF
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plot18 Full medium, MKN1 cell line MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 5 ng/ml EGF pEGFR_ID3_MKN1_FM CET_level 0 0 ID3_MKN1_FM__5EGF
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plot58 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin EGFR lin 0 ng/ml EGF EGFR_ID4_MKN1_HM_3min CET_level 0 0 ID4_MKN1_HM_3min__0EGF
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plot58 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin EGFR lin 30 ng/ml EGF EGFR_ID4_MKN1_HM_3min CET_level 0 0 ID4_MKN1_HM_3min__30EGF
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plot59 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 0 ng/ml EGF pEGFR_ID4_MKN1_HM_3min CET_level 0 0 ID4_MKN1_HM_3min__0EGF
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plot59 Starvation medium, MKN1 cell line, t = 3 min MeanAndSD LinePlot CET [$\mu$g/ml] lin pEGFR lin 30 ng/ml EGF pEGFR_ID4_MKN1_HM_3min CET_level 0 0 ID4_MKN1_HM_3min__30EGF

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