switch to v1 format

Author: dilpath

Benchmark-Models/Raia_CancerResearch2011/Raia_CancerResearch2011.yaml

@@ -1,4 +1,4 @@
-format_version: 2
+format_version: 1
 parameter_file: parameters_Raia_CancerResearch2011.tsv
 problems:
 - condition_files:

Benchmark-Models/Raia_CancerResearch2011/Raia_CancerResearch2011_v1/Raia_CancerResearch2011.yaml

@@ -1,9 +1,9 @@
 observableId	observableName	observableFormula	noiseFormula	observableTransformation	noiseDistribution
-observable_CD274mRNA		CD274mRNA * observableParameter1_observable_CD274mRNA	noiseParameter1_observable_CD274mRNA + noiseParameter2_observable_CD274mRNA * observable_CD274mRNA	lin	normal
-observable_IL13_cell		observableParameter1_observable_IL13_cell * (IL13_Rec + IL13_DecoyR + p_IL13_Rec + p_IL13_Rec_i)	noiseParameter1_observable_IL13_cell + noiseParameter2_observable_IL13_cell * observable_IL13_cell	lin	normal
-observable_RecSurf		IL13_Rec + Rec + p_IL13_Rec	noiseParameter1_observable_RecSurf + noiseParameter2_observable_RecSurf * observable_RecSurf	lin	normal
-observable_SOCS3		SOCS3	noiseParameter1_observable_SOCS3 + noiseParameter2_observable_SOCS3 * observable_SOCS3	lin	normal
-observable_SOCS3mRNA		SOCS3mRNA * observableParameter1_observable_SOCS3mRNA	noiseParameter1_observable_SOCS3mRNA + noiseParameter2_observable_SOCS3mRNA * observable_SOCS3mRNA	lin	normal
-observable_pIL4Ra		observableParameter1_observable_pIL4Ra * (p_IL13_Rec + p_IL13_Rec_i)	noiseParameter1_observable_pIL4Ra + noiseParameter2_observable_pIL4Ra * observable_pIL4Ra	lin	normal
-observable_pJAK2		pJAK2 * observableParameter1_observable_pJAK2	noiseParameter1_observable_pJAK2 + noiseParameter2_observable_pJAK2 * observable_pJAK2	lin	normal
-observable_pSTAT5		pSTAT5	noiseParameter1_observable_pSTAT5 + noiseParameter2_observable_pSTAT5 * observable_pSTAT5	lin	normal
+observable_CD274mRNA		CD274mRNA * observableParameter1_observable_CD274mRNA	noiseParameter1_observable_CD274mRNA + noiseParameter2_observable_CD274mRNA * (CD274mRNA * observableParameter1_observable_CD274mRNA)	lin	normal
+observable_IL13_cell		observableParameter1_observable_IL13_cell * (IL13_Rec + IL13_DecoyR + p_IL13_Rec + p_IL13_Rec_i)	noiseParameter1_observable_IL13_cell + noiseParameter2_observable_IL13_cell * (observableParameter1_observable_IL13_cell * (IL13_Rec + IL13_DecoyR + p_IL13_Rec + p_IL13_Rec_i))	lin	normal
+observable_RecSurf		IL13_Rec + Rec + p_IL13_Rec	noiseParameter1_observable_RecSurf + noiseParameter2_observable_RecSurf * (IL13_Rec + Rec + p_IL13_Rec)	lin	normal
+observable_SOCS3		SOCS3	noiseParameter1_observable_SOCS3 + noiseParameter2_observable_SOCS3 * SOCS3	lin	normal
+observable_SOCS3mRNA		SOCS3mRNA * observableParameter1_observable_SOCS3mRNA	noiseParameter1_observable_SOCS3mRNA + noiseParameter2_observable_SOCS3mRNA * (SOCS3mRNA * observableParameter1_observable_SOCS3mRNA)	lin	normal
+observable_pIL4Ra		observableParameter1_observable_pIL4Ra * (p_IL13_Rec + p_IL13_Rec_i)	noiseParameter1_observable_pIL4Ra + noiseParameter2_observable_pIL4Ra * (observableParameter1_observable_pIL4Ra * (p_IL13_Rec + p_IL13_Rec_i))	lin	normal
+observable_pJAK2		pJAK2 * observableParameter1_observable_pJAK2	noiseParameter1_observable_pJAK2 + noiseParameter2_observable_pJAK2 * (pJAK2 * observableParameter1_observable_pJAK2)	lin	normal
+observable_pSTAT5		pSTAT5	noiseParameter1_observable_pSTAT5 + noiseParameter2_observable_pSTAT5 * pSTAT5	lin	normal