Skip to content

Commit 35c2776

Browse files
authored
Fix priors for Schwen, Bachmann (#143)
* increase accuracy of priors * fix column names
1 parent 5890bc7 commit 35c2776

2 files changed

Lines changed: 9 additions & 9 deletions

File tree

Benchmark-Models/Bachmann_MSB2011/parameters_Bachmann_MSB2011.tsv

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
1-
parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate objectivePrior objectivePriorParameters
1+
parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate objectivePriorType objectivePriorParameters
22
CISEqc CISEqc log10 0.001 10000 432.854027325732 1
33
CISEqcOE CISEqcOE log10 0.001 1000 0.53027229006794 1
44
CISInh CISInh log10 0.001 1000000000000 785221045.232906 1
@@ -25,7 +25,7 @@ STAT5ActEpoR STAT5ActEpoR log10 0.001 1000 38.9972748894298 1
2525
STAT5ActJAK2 STAT5ActJAK2 log10 0.001 1000 0.078108833252848 1
2626
STAT5Exp STAT5Exp log10 0.001 1000 0.074514698833232 1
2727
STAT5Imp STAT5Imp log10 0.001 1000 0.026887318057561 1
28-
init_EpoRJAK2 init_{EpoRJAK2} log10 0.001 1000 3.97622379188569 1 parameterScaleNormal 0.599471;0.193459
28+
init_EpoRJAK2 init_{EpoRJAK2} log10 0.001 1000 3.97622379188569 1 parameterScaleNormal 0.599470870492697;0.193459292722329
2929
init_SHP1 init_{SHP1} log10 0.001 1000 26.7251164163486 1
3030
init_STAT5 init_{STAT5} log10 0.001 1000 79.753639977851 1
3131
offset_CIS_actd offset_{CIS,actd} log10 0.001 1000 0.009388328725541 1

Benchmark-Models/Schwen_PONE2014/parameters_Schwen_PONE2014.tsv

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
1-
parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate objectivePrior objectivePriorParameters
1+
parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate objectivePriorType objectivePriorParameters
22
IR_obs_std IR_{obs,std} log10 1E-05 0.056234132519035 0.04718566713256 1
33
fragments fragments lin 0 1 0.999999072086866 1
4-
ini_R1 ini_{R1} log10 1E-05 1000 58.8503656504712 1 parameterScaleNormal 1.80977;3
5-
ini_R2fold ini_{R2fold} log10 1E-05 1000 15.6091614910056 1 parameterScaleNormal 1.19692;3
6-
ka1 ka1 log10 1E-05 1000 0.003799559577141 1 parameterScaleNormal -4.00677;3
7-
ka2fold ka2fold log10 1E-05 1000 4.90235664339923 1 parameterScaleNormal -0.0186139;3
8-
kd1 kd1 log10 1E-05 1000 9.1452569352756 1 parameterScaleNormal -0.917793;3
9-
kd2fold kd2fold log10 1E-05 1000 6.94256361634239 1 parameterScaleNormal -0.105609;3
4+
ini_R1 ini_{R1} log10 1E-05 1000 58.8503656504712 1 parameterScaleNormal 1.809765366817905;3
5+
ini_R2fold ini_{R2fold} log10 1E-05 1000 15.6091614910056 1 parameterScaleNormal 1.196922192866968;3
6+
ka1 ka1 log10 1E-05 1000 0.003799559577141 1 parameterScaleNormal -4.006774320046476;3
7+
ka2fold ka2fold log10 1E-05 1000 4.90235664339923 1 parameterScaleNormal -0.018613892336092;3
8+
kd1 kd1 log10 1E-05 1000 9.1452569352756 1 parameterScaleNormal -0.917792647716124;3
9+
kd2fold kd2fold log10 1E-05 1000 6.94256361634239 1 parameterScaleNormal -0.105608820817629;3
1010
kin kin log10 1E-05 1000 0.371867742056691 1
1111
kin2 kin2 log10 1E-05 1000 0.538281644062314 1
1212
km_nExpID1 km_{nExpID1} log10 1000 100000000 99999998.6188564 1

0 commit comments

Comments
 (0)