From dbfcb1d0b81c6cdc0c4191808cc3145735b44f4b Mon Sep 17 00:00:00 2001
From: Stephen Anyango <anyango@ebi.ac.uk>
Date: Tue, 21 Nov 2023 12:01:17 +0000
Subject: [PATCH] Update to packaging configuration

`tools.setuptools` section has `include_package_data=True` by default.
The `license` field requires specific license syntax
ref: https://setuptools.pypa.io/en/latest/userguide/pyproject_config.html
---
 manifest.in => MANIFEST.in |  2 +-
 pyproject.toml             |  9 +++++++--
 setup.py                   | 16 ----------------
 3 files changed, 8 insertions(+), 19 deletions(-)
 rename manifest.in => MANIFEST.in (64%)
 delete mode 100644 setup.py

diff --git a/manifest.in b/MANIFEST.in
similarity index 64%
rename from manifest.in
rename to MANIFEST.in
index d84cc1a..eadcb8c 100644
--- a/manifest.in
+++ b/MANIFEST.in
@@ -1,3 +1,3 @@
 include fr3d/data/*.txt
 include fr3d/classifiers/*.html
-include fr3d/classifiers/*.csv
\ No newline at end of file
+include fr3d/classifiers/*.csv
diff --git a/pyproject.toml b/pyproject.toml
index 9f51238..3aff1d2 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -4,14 +4,19 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "fr3d"
-version = "0.0.1"
+version = "0.0.2"
 description = "Python implementation of FR3D"
 authors = [{name="Craig L. Zirbel and others", email="zirbel@bgsu.edu"}]
-
+license = { text = "Apache-2.0"}
 dependencies = [
 	"numpy",
 	"scipy",
 	"mmcif-pdbx; python_version>='3.0'"
 ]
 
+[tools.setuptools]
+packages = ["fr3d"]
+
+
+
 
diff --git a/setup.py b/setup.py
deleted file mode 100644
index 2b5e8be..0000000
--- a/setup.py
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/usr/bin/env python
-
-from setuptools import setup, find_packages
-
-setup(
-    name='fr3d',
-    version='0.0.1',
-    packages=find_packages(include=['fr3d', 'fr3d.*']),
-    include_package_data=True,
-    url='',
-    license='LICENSE.txt',
-    install_requires=["numpy", "scipy", "mmcif-pdbx; python_version >= '3.0'"],
-    description='Python implementation of FR3D',
-    long_description="",
-    data_files=[('fr3d/data',['fr3d/data/atom_mappings.txt']),('fr3d/classifiers', ['fr3d/classifiers/template.html','fr3d/classifiers/H_bonding_Atoms_from_Isostericity_Table.csv'])]
-)